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1mtz

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(New page: 200px<br /><applet load="1mtz" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mtz, resolution 1.8&Aring;" /> '''Crystal Structure of ...)
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[[Image:1mtz.gif|left|200px]]<br /><applet load="1mtz" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1mtz, resolution 1.8&Aring;" />
 
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'''Crystal Structure of the Tricorn Interacting Factor F1'''<br />
 
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==Overview==
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==Crystal Structure of the Tricorn Interacting Factor F1==
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F1 is a 33.5 kDa serine peptidase of the alpha/beta-hydrolase family from, the archaeon Thermoplasma acidophilum. Subsequent to proteasomal protein, degradation, tricorn generates small peptides, which are cleaved by F1 to, yield single amino acids. We have solved the crystal structure of F1 with, multiwavelength anomalous dispersion (MAD) phasing at 1.8 A resolution. In, addition to the conserved catalytic domain, the structure reveals a, chiefly alpha-helical domain capping the catalytic triad. Thus, the active, site is accessible only through a narrow opening from the protein surface., Two structures with molecules bound to the active serine, including the, inhibitor phenylalanyl chloromethylketone, elucidate the N-terminal, recognition of substrates and the catalytic activation switch mechanism of, F1. The cap domain mainly confers the specificity for hydrophobic side, chains by a novel cavity system, which, analogously to the tricorn, protease, guides substrates to the buried active site and products away, from it. Finally, the structure of F1 suggests a possible functional, complex with tricorn that allows efficient processive degradation to free, amino acids for cellular recycling.
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<StructureSection load='1mtz' size='340' side='right'caption='[[1mtz]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1mtz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MTZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MTZ FirstGlance]. <br>
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1MTZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Active as [http://en.wikipedia.org/wiki/Prolyl_aminopeptidase Prolyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.5 3.4.11.5] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MTZ OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mtz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mtz OCA], [https://pdbe.org/1mtz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mtz RCSB], [https://www.ebi.ac.uk/pdbsum/1mtz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mtz ProSAT]</span></td></tr>
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==Reference==
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</table>
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Structures of the tricorn-interacting aminopeptidase F1 with different ligands explain its catalytic mechanism., Goettig P, Groll M, Kim JS, Huber R, Brandstetter H, EMBO J. 2002 Oct 15;21(20):5343-52. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12374735 12374735]
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== Function ==
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[[Category: Prolyl aminopeptidase]]
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[https://www.uniprot.org/uniprot/PIP_THEAC PIP_THEAC] Cleaves H-Pro-AMC as well as a wide spectrum of amino acid substrates and several peptide substrates without a proline at the N-terminus. Proteases F1, F2 and F3 degrade oligopeptides produced by Tricorn (themselves probably produced by the proteasome) yielding free amino acids.
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[[Category: Single protein]]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mt/1mtz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mtz ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Thermoplasma acidophilum]]
[[Category: Thermoplasma acidophilum]]
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[[Category: Brandstetter, H.]]
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[[Category: Brandstetter H]]
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[[Category: Goettig, P.]]
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[[Category: Goettig P]]
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[[Category: Groll, M.]]
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[[Category: Groll M]]
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[[Category: Huber, R.]]
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[[Category: Huber R]]
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[[Category: Kim, J.S.]]
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[[Category: Kim J-S]]
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[[Category: alpha-beta hydrolase]]
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[[Category: caged active site]]
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[[Category: cap domain]]
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[[Category: prolyl peptidase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:41:57 2007''
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Current revision

Crystal Structure of the Tricorn Interacting Factor F1

PDB ID 1mtz

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