This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mz4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:43, 10 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1mz4.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Cytochrome c550 from Thermosynechococcus elongatus==
-
The line below this paragraph, containing "STRUCTURE_1mz4", creates the "Structure Box" on the page.
+
<StructureSection load='1mz4' size='340' side='right'caption='[[1mz4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1mz4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MZ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MZ4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1mz4| PDB=1mz4 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mz4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mz4 OCA], [https://pdbe.org/1mz4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mz4 RCSB], [https://www.ebi.ac.uk/pdbsum/1mz4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mz4 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CY550_THEVB CY550_THEVB] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations. PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.<ref>PMID:11427679</ref> <ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mz/1mz4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mz4 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of Cytochrome c550 from Thermosynechococcus elongatus===
+
==See Also==
-
 
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12881497}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 12881497 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Large Structures]]
-
{{ABSTRACT_PUBMED_12881497}}
+
[[Category: Thermosynechococcus vestitus]]
-
 
+
[[Category: Bottin H]]
-
==About this Structure==
+
[[Category: Boussac A]]
-
1MZ4 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MZ4 OCA].
+
[[Category: Kerfeld CA]]
-
 
+
[[Category: Kirilovsky D]]
-
==Reference==
+
[[Category: Krogmann D]]
-
<ref group="xtra">PMID:12881497</ref><references group="xtra"/>
+
[[Category: Sawaya MR]]
-
[[Category: Thermosynechococcus elongatus]]
+
[[Category: Sugiura M]]
-
[[Category: Bottin, H.]]
+
[[Category: Tran KT]]
-
[[Category: Boussac, A.]]
+
[[Category: Yeates TO]]
-
[[Category: Kerfeld, C A.]]
+
-
[[Category: Kirilovsky, D.]]
+
-
[[Category: Krogmann, D.]]
+
-
[[Category: Sawaya, M R.]]
+
-
[[Category: Sugiura, M.]]
+
-
[[Category: Tran, K T.]]
+
-
[[Category: Yeates, T O.]]
+
-
[[Category: Psii associated cytochrome]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:23:06 2009''
+

Current revision

Crystal Structure of Cytochrome c550 from Thermosynechococcus elongatus

PDB ID 1mz4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mz4"
Personal tools