This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1n1i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:44, 10 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1n1i.png|left|200px]]
 
-
<!--
+
==The structure of MSP-1(19) from Plasmodium knowlesi==
-
The line below this paragraph, containing "STRUCTURE_1n1i", creates the "Structure Box" on the page.
+
<StructureSection load='1n1i' size='340' side='right'caption='[[1n1i]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1n1i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_knowlesi_strain_H Plasmodium knowlesi strain H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N1I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N1I FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HIS:HISTIDINE'>HIS</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
-
{{STRUCTURE_1n1i| PDB=1n1i | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n1i OCA], [https://pdbe.org/1n1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n1i RCSB], [https://www.ebi.ac.uk/pdbsum/1n1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n1i ProSAT]</span></td></tr>
-
 
+
</table>
-
===The structure of MSP-1(19) from Plasmodium knowlesi===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9GSQ9_PLAKN Q9GSQ9_PLAKN]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12493733}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12493733 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n1/1n1i_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12493733}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1N1I is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Plasmodium_knowlesi Plasmodium knowlesi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N1I OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n1i ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:12493733</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Plasmodium knowlesi]]
+
[[Category: Large Structures]]
-
[[Category: Garboczi, D N.]]
+
[[Category: Plasmodium knowlesi strain H]]
-
[[Category: Garman, S C.]]
+
[[Category: Garboczi DN]]
-
[[Category: Simcoke, W N.]]
+
[[Category: Garman SC]]
-
[[Category: Stowers, A W.]]
+
[[Category: Simcoke WN]]
-
[[Category: Egf domain]]
+
[[Category: Stowers AW]]
-
[[Category: Glycoprotein]]
+
-
[[Category: Malaria]]
+
-
[[Category: Msp1]]
+
-
[[Category: Surface antigen]]
+
-
[[Category: Surface protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:00:59 2009''
+

Current revision

The structure of MSP-1(19) from Plasmodium knowlesi

PDB ID 1n1i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1n1i"
Personal tools