1ni3
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1ni3" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ni3, resolution 2.80Å" /> '''Structure of the Sch...) |
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| - | [[Image:1ni3.gif|left|200px]]<br /><applet load="1ni3" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1ni3, resolution 2.80Å" /> | ||
| - | '''Structure of the Schizosaccharomyces pombe YchF GTPase'''<br /> | ||
| - | == | + | ==Structure of the Schizosaccharomyces pombe YchF GTPase== |
| - | + | <StructureSection load='1ni3' size='340' side='right'caption='[[1ni3]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | [[ | + | <table><tr><td colspan='2'>[[1ni3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NI3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NI3 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ni3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ni3 OCA], [https://pdbe.org/1ni3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ni3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ni3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ni3 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ni3 TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/OLA1_SCHPO OLA1_SCHPO] Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (By similarity). Negatively regulates the G2/M transition in the cell cycle.[HAMAP-Rule:MF_03167]<ref>PMID:22624651</ref> | |
| - | + | == Evolutionary Conservation == | |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ni/1ni3_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ni3 ConSurf]. | |
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Schizosaccharomyces pombe]] | ||
| + | [[Category: Buglino JA]] | ||
| + | [[Category: Burley SK]] | ||
| + | [[Category: Kniewel RK]] | ||
| + | [[Category: Lima CD]] | ||
Current revision
Structure of the Schizosaccharomyces pombe YchF GTPase
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