This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nm3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:51, 10 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1nm3.png|left|200px]]
 
-
<!--
+
==Crystal structure of Heamophilus influenza hybrid-Prx5==
-
The line below this paragraph, containing "STRUCTURE_1nm3", creates the "Structure Box" on the page.
+
<StructureSection load='1nm3' size='340' side='right'caption='[[1nm3]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nm3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NM3 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1nm3| PDB=1nm3 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nm3 OCA], [https://pdbe.org/1nm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nm3 RCSB], [https://www.ebi.ac.uk/pdbsum/1nm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nm3 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of Heamophilus influenza hybrid-Prx5===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PRX5_HAEIN PRX5_HAEIN]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12529327}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12529327 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nm/1nm3_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12529327}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1NM3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NM3 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nm3 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
The tetrameric structure of Haemophilus influenza hybrid Prx5 reveals interactions between electron donor and acceptor proteins., Kim SJ, Woo JR, Hwang YS, Jeong DG, Shin DH, Kim K, Ryu SE, J Biol Chem. 2003 Mar 21;278(12):10790-8. Epub 2003 Jan 14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12529327 12529327]
+
</StructureSection>
[[Category: Haemophilus influenzae]]
[[Category: Haemophilus influenzae]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Hwang, Y S.]]
+
[[Category: Hwang YS]]
-
[[Category: Jeong, D G.]]
+
[[Category: Jeong DG]]
-
[[Category: Kim, K H.]]
+
[[Category: Kim KH]]
-
[[Category: Kim, S J.]]
+
[[Category: Kim SJ]]
-
[[Category: Ryu, S E.]]
+
[[Category: Ryu SE]]
-
[[Category: Shin, D H.]]
+
[[Category: Shin DH]]
-
[[Category: Woo, J R.]]
+
[[Category: Woo JR]]
-
[[Category: Glutaredoxin]]
+
-
[[Category: Hybrid]]
+
-
[[Category: Peroxiredoxin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 13:54:50 2008''
+

Current revision

Crystal structure of Heamophilus influenza hybrid-Prx5

PDB ID 1nm3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools