This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1noz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:52, 10 April 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1noz.png|left|200px]]
 
-
<!--
+
==T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K==
-
The line below this paragraph, containing "STRUCTURE_1noz", creates the "Structure Box" on the page.
+
<StructureSection load='1noz' size='340' side='right'caption='[[1noz]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1noz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NOZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NOZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1noz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1noz OCA], [https://pdbe.org/1noz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1noz RCSB], [https://www.ebi.ac.uk/pdbsum/1noz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1noz ProSAT]</span></td></tr>
-
{{STRUCTURE_1noz| PDB=1noz | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPOL_BPT4 DPOL_BPT4] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/no/1noz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1noz ConSurf].
 +
<div style="clear:both"></div>
-
===T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K===
+
==See Also==
-
 
+
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_8679562}}, adds the Publication Abstract to the page
+
[[Category: Escherichia virus T4]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 8679562 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Konigsberg WH]]
-
{{ABSTRACT_PUBMED_8679562}}
+
[[Category: Lin TC]]
-
 
+
[[Category: Steitz TA]]
-
==About this Structure==
+
[[Category: Wang J]]
-
1NOZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NOZ OCA].
+
[[Category: Yu P]]
-
 
+
-
==Reference==
+
-
Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions., Wang J, Yu P, Lin TC, Konigsberg WH, Steitz TA, Biochemistry. 1996 Jun 25;35(25):8110-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8679562 8679562]
+
-
[[Category: DNA-directed DNA polymerase]]
+
-
[[Category: Enterobacteria phage t4]]
+
-
[[Category: Single protein]]
+
-
[[Category: Konigsberg, W H.]]
+
-
[[Category: Lin, T C.]]
+
-
[[Category: Steitz, T A.]]
+
-
[[Category: Wang, J.]]
+
-
[[Category: Yu, P.]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Exonuclease]]
+
-
[[Category: Nucleotidyltransferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 20:09:34 2008''
+

Current revision

T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K

PDB ID 1noz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1noz"
Personal tools