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1ny7

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{{Seed}}
 
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[[Image:1ny7.png|left|200px]]
 
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==COWPEA MOSAIC VIRUS (CPMV)==
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The line below this paragraph, containing "STRUCTURE_1ny7", creates the "Structure Box" on the page.
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<StructureSection load='1ny7' size='340' side='right'caption='[[1ny7]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ny7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cowpea_mosaic_virus Cowpea mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NY7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NY7 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ny7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ny7 OCA], [https://pdbe.org/1ny7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ny7 RCSB], [https://www.ebi.ac.uk/pdbsum/1ny7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ny7 ProSAT]</span></td></tr>
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{{STRUCTURE_1ny7| PDB=1ny7 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/POL2_CPMVS POL2_CPMVS] Movement protein: transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Acts by forming a tubular structure at the host plasmodesmata, enlarging it enough to allow free passage of virion capsids. Binds to GTP and to single-stranded RNA and single-stranded DNA in a non-sequence-specific manner.<ref>PMID:10049828</ref> <ref>PMID:15483261</ref> <ref>PMID:15165817</ref> <ref>PMID:14722313</ref> The cleavable C-terminus of small coat protein seems to be involved in the packaging of the virion RNAs. Also seems to act as suppressor of post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs.<ref>PMID:10049828</ref> <ref>PMID:15483261</ref> <ref>PMID:15165817</ref> <ref>PMID:14722313</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/1ny7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ny7 ConSurf].
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<div style="clear:both"></div>
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===COWPEA MOSAIC VIRUS (CPMV)===
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==See Also==
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*[[Cowpea Chlorotic Mottle Virus|Cowpea Chlorotic Mottle Virus]]
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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== References ==
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The line below this paragraph, {{ABSTRACT_PUBMED_10603314}}, adds the Publication Abstract to the page
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<references/>
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(as it appears on PubMed at http://www.pubmed.gov), where 10603314 is the PubMed ID number.
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__TOC__
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</StructureSection>
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{{ABSTRACT_PUBMED_10603314}}
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==About this Structure==
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1NY7 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Cowpea_mosaic_virus Cowpea mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NY7 OCA].
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==Reference==
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<ref group="xtra">PMID:10603314</ref><references group="xtra"/>
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[[Category: Cowpea mosaic virus]]
[[Category: Cowpea mosaic virus]]
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[[Category: Chen, Z.]]
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[[Category: Large Structures]]
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[[Category: Dai, J B.]]
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[[Category: Chen Z]]
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[[Category: Johnson, J E.]]
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[[Category: Dai J-B]]
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[[Category: Lin, T.]]
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[[Category: Johnson JE]]
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[[Category: Schmidt, T.]]
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[[Category: Lin T]]
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[[Category: Stauffacher, C V.]]
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[[Category: Schmidt T]]
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[[Category: Usha, R.]]
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[[Category: Stauffacher CV]]
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[[Category: Comovirus]]
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[[Category: Usha R]]
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[[Category: Icosahedral virus]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 16:54:52 2009''
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Current revision

COWPEA MOSAIC VIRUS (CPMV)

PDB ID 1ny7

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