This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nz0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:54, 10 April 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1nz0.png|left|200px]]
 
-
<!--
+
==RNASE P PROTEIN FROM THERMOTOGA MARITIMA==
-
The line below this paragraph, containing "STRUCTURE_1nz0", creates the "Structure Box" on the page.
+
<StructureSection load='1nz0' size='340' side='right'caption='[[1nz0]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1nz0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NZ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NZ0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1nz0| PDB=1nz0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nz0 OCA], [https://pdbe.org/1nz0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nz0 RCSB], [https://www.ebi.ac.uk/pdbsum/1nz0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nz0 ProSAT], [https://www.topsan.org/Proteins/BSGC/1nz0 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RNPA_THEMA RNPA_THEMA] RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nz/1nz0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nz0 ConSurf].
 +
<div style="clear:both"></div>
-
===RNASE P PROTEIN FROM THERMOTOGA MARITIMA===
+
==See Also==
-
 
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12799461}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12799461 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_12799461}}
+
-
 
+
-
==About this Structure==
+
-
1NZ0 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NZ0 OCA].
+
-
 
+
-
==Reference==
+
-
High-resolution structure of RNase P protein from Thermotoga maritima., Kazantsev AV, Krivenko AA, Harrington DJ, Carter RJ, Holbrook SR, Adams PD, Pace NR, Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7497-502. Epub 2003 Jun 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12799461 12799461]
+
-
[[Category: Ribonuclease P]]
+
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Adams, P D.]]
+
[[Category: Adams PD]]
-
[[Category: BSGC, Berkeley Structural Genomics Center.]]
+
[[Category: Carter RJ]]
-
[[Category: Carter, R J.]]
+
[[Category: Harrington DJ]]
-
[[Category: Harrington, D J.]]
+
[[Category: Holbrook SR]]
-
[[Category: Holbrook, S R.]]
+
[[Category: Kazantsev AV]]
-
[[Category: Kazantsev, A V.]]
+
[[Category: Krivenko AA]]
-
[[Category: Krivenko, A A.]]
+
[[Category: Pace NR]]
-
[[Category: Pace, N R.]]
+
-
[[Category: Alfa-beta sandwich]]
+
-
[[Category: Berkeley structural genomics center]]
+
-
[[Category: Bsgc structure funded by nih]]
+
-
[[Category: Dimer]]
+
-
[[Category: Endonuclease]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Rnase]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:04:03 2008''
+

Current revision

RNASE P PROTEIN FROM THERMOTOGA MARITIMA

PDB ID 1nz0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools