Introduction

Figure 1. AMYR with RAMP3 and Amylin Peptide

The human amylin receptor is a G-coupled protein receptor.

Amylin

Amylin is a neuroendocrine hormone that is synthesized with insulin in the beta cells of pancreatic islets. It can cross the blood-brain barrier and regulates glucose homeostasis via inhibiting gastric emptying, inhibiting the release of glucagon, and inducing meal-ending satiety^[1]. In doing so, it prevents spikes in blood glucose and overeating, making it a suitable target for Type 2 Diabetes treatments and therapies. Seeing as Type 2 Diabetes is a major risk factor for Alzheimer's Disease, as Type 2 Diabetes cases continue to increase, there will likely be a spike in Alzheimer’s Disease as well^[2]. Therefore, it is vital that amylin, its receptor, and analogs, such as pramlintide, are understood to aid in rational drug design.

Figure 2. Effects of Amylin in Humans

Structure

Amylin Receptor

The amylin receptor (AMYR) is the result of the heterodimerization of the calcitonin receptor (CT) and a receptor-activity modifying protein (RAMP). The patterns of peptide interaction between CT and AMYR are very similar overall, but amylin has a higher affinity for AMYR1 and AMYR3 than AMYR2^[3].

Figure 3. Heterodimerization of CT and RAMPs

Calcitonin Receptor and G-alpha Interactions

The calcitonin receptor forms several highly conserved interactions with the Gɑ subunit. The main chain of N396 on CT hydrogen bonds with the sidechain of E392 on Gɑ, as do the main chain of I248 and sidechain of Q384, respectively^[3].

RAMPs

To form the full AMYR complex, the calcitonin receptor must bind to one of three RAMPs (insert RAMP images). The three RAMPs have 31% sequence identity and bind very similarly to the CT, except RAMP2 has slightly looser packing^[3]. All three RAMPs serve the purpose of drastically increasing the CT’s binding affinity for amylin. RAMP3 is the version most heavily implicated in pramlintide targeting and Alzheimer’s Disease.

Amylin Binding

Y37 of amylin, the C-terminal residue, forms hydrogen bonds with E101 in RAMP2 or E74 in RAMP3. It also forms van der Waals interactions with F111 in RAMP2 or W84 and P85 in both RAMP1 and 3. Uniquely, in RAMP3, W84 can adopt two conformations in RAMP3; one of which lies closer to Y37 and the other aligns almost perfectly with W84’s placement in RAMP1^[3].

Amylin Receptor Functional Overview

Hydrophobic Interactions

on the C-terminus of the amylin peptide has extensive van der Waals interactions with the CT and RAMP3. The pi stacking and hydrophobic interactions increase the affinity and interactions between the amylin peptide, CT, and RAMP3, aiding in their association.

Amidated C-Terminus

Y37 of amylin is amidated. The amide group forms a hydrogen bond with the backbone of S129 on the calcitonin receptor. All biological activity was lost when this amide group was experimentally removed^[3].

K1

K1, a highly conserved residue of amylin, interacts with K141 on the calcitonin receptor via a water molecule^[3].

T6

T6, a highly conserved residue of amylin in the disulfide loop, interacts with H302 on the calcitonin receptor^[3].

R11

R11 is situated toward the N-terminal end of amylin’s main alpha helix and is packed against the residues at the N-terminus. This residue forms multiple interactions with various residues to keep the N-terminal end of the helix and the disulfide loop in place. R11 pulls on the backbones of C2 and C4 in the disulfide loop and interacts with the backbones of N3 and A8. It also attracts the hydroxyl group of Y372 of the calcitonin receptor. Furthermore, R11 stabilizes various nearby waters to form bridges between amylin and the receptor^[3].

R18

R18 lies at the C-terminal end of the main alpha helix and can adopt two different configurations. The “upper” configuration provides stronger interactions with various residues on the calcitonin receptor and is potentially what causes the helix to terminate around R18. Specifically, R18 interacts with the sidechain of D97 and the backbones of F99, P100, and F102. The latter three residues may also form van der Waals interactions and pi stacking with each other^[3].

T9 Water Network

Threonine 9 is an essential residue for stabilization of amylin in the receptor. Threonine side chains are polar which allow them to hydrogen bond with other nearby polar groups, which can lead to extensive networks of interactions. This is seen in amylin at T9. T9 interacts with the main chain of Y191, M230, I380, and H381 of the calcitonin receptor and many surrounding water molecules, but it also interacts with the side chains of S159, N194, S195, H226, N233, and Q383. All of these interactions create a very strong interaction between amylin and the receptor. The water network also helps stabilize the active receptor conformation.

Disease

Pramlintide Analogue

The first human amylin analogue, , was developed in 1995, and marked a significant advancement in the treatment of Type 2 Diabetes^[4]. As of 2024, it is the only FDA-approved drug for the treatment of Type 2 Diabetes using the AMYR as a target. Recent studies in rodent Alzheimer’s Disease models suggest that pramlintide reduces amyloid-beta plaques, making it a potential therapeutic target for Alzheimer’s Disease^[2].

There is limited knowledge about how human amylin binds to the human AMYR, so many studies utilize rat amylin as the peptide for the human AMYR. Rat amylin and pramlintide showcase very similar structures and maintain a high sequence similarity. For instance, the N-term lysine residue is conserved between and , as well as human amylin ^[3], suggesting that the lysine is integral for binding to AMYR. The residue changes between the two include , , in rat amylin to in pramlintide, and in rat amylin to in pramlintide. While these residues differ, the overall properties of the various residues remain consistent, so many of the same interactions with AMYR are likely still able to form.

Human amylin and pramlintide only differ at 3 residues, with all three being changed to proline in pramlintide. The mutations break the helical nature present in human amylin, which likely prevents the aggregation of amyloid beta plaques in Alzheimer’s Disease.