1brd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:32, 17 April 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1brd.png|left|200px]]
 
-
<!--
+
==Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy==
-
The line below this paragraph, containing "STRUCTURE_1brd", creates the "Structure Box" on the page.
+
<StructureSection load='1brd' size='340' side='right'caption='[[1brd]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1brd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BRD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
{{STRUCTURE_1brd| PDB=1brd | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1brd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1brd OCA], [https://pdbe.org/1brd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1brd RCSB], [https://www.ebi.ac.uk/pdbsum/1brd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1brd ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/1brd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1brd ConSurf].
 +
<div style="clear:both"></div>
-
===Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy===
+
==See Also==
-
 
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_2359127}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 2359127 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_2359127}}
+
-
 
+
-
==About this Structure==
+
-
1BRD is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRD OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:2359127</ref><references group="xtra"/>
+
[[Category: Halobacterium salinarum]]
[[Category: Halobacterium salinarum]]
-
[[Category: Baldwin, J M.]]
+
[[Category: Large Structures]]
-
[[Category: Beckmann, E.]]
+
[[Category: Baldwin JM]]
-
[[Category: Ceska, T A.]]
+
[[Category: Beckmann E]]
-
[[Category: Downing, K H.]]
+
[[Category: Ceska TA]]
-
[[Category: Henderson, R.]]
+
[[Category: Downing KH]]
-
[[Category: Zemlin, F.]]
+
[[Category: Henderson R]]
-
[[Category: Photoreceptor]]
+
[[Category: Zemlin F]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:09:45 2010''
+

Current revision

Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy

PDB ID 1brd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1brd"
Personal tools