This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1ogk
From Proteopedia
(Difference between revisions)
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_1ogk", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...) |
|||
| (10 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1ogk.png|left|200px]] | ||
| - | + | ==The crystal structure of Trypanosoma cruzi dUTPase in complex with dUDP== | |
| - | The | + | <StructureSection load='1ogk' size='340' side='right'caption='[[1ogk]], [[Resolution|resolution]] 2.85Å' scene=''> |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1ogk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OGK FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUD:DEOXYURIDINE-5-DIPHOSPHATE'>DUD</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ogk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ogk OCA], [https://pdbe.org/1ogk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ogk RCSB], [https://www.ebi.ac.uk/pdbsum/1ogk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ogk ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | === | + | == Function == |
| - | + | [https://www.uniprot.org/uniprot/O15923_TRYCR O15923_TRYCR] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/1ogk_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | == | + | </jmolCheckbox> |
| - | [[1ogk]] is a 4 chain structure | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ogk ConSurf]. |
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[ | + | *[[DUTPase 3D structures|DUTPase 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | < | + | [[Category: Large Structures]] |
[[Category: Trypanosoma cruzi]] | [[Category: Trypanosoma cruzi]] | ||
| - | + | [[Category: Bernier-Villamor V]] | |
| - | [[Category: Bernier-Villamor | + | [[Category: Dodson EJ]] |
| - | [[Category: Dodson | + | [[Category: Gonzalez-Pacanowska D]] |
| - | [[Category: Gonzalez-Pacanowska | + | [[Category: Harkiolaki M]] |
| - | [[Category: Harkiolaki | + | [[Category: Turkenburg JP]] |
| - | [[Category: Turkenburg | + | [[Category: Wilson KS]] |
| - | [[Category: Wilson | + | |
| - | + | ||
| - | + | ||
Current revision
The crystal structure of Trypanosoma cruzi dUTPase in complex with dUDP
| |||||||||||
