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1oil

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[[Image:1oil.gif|left|200px]]<br />
 
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<applet load="1oil" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1oil, resolution 2.10&Aring;" />
 
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'''STRUCTURE OF LIPASE'''<br />
 
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==Overview==
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==STRUCTURE OF LIPASE==
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BACKGROUND:. Lipases, a family of enzymes which catalyze the hydrolysis of, triglycerides, are widely distributed in many organisms. True lipases are, distinguished from esterases by the characteristic interfacial activation, they exhibit at an oil-water interface. Lipases are one of the most, frequently used biocatalysts for organic reactions performed under mild, conditions. Their biotechnological applications include food and oil, processing and the preparation of chiral intermediates for the synthesis, of enantiomerically pure pharmaceuticals. Recent structural studies on, several lipases have provided some clues towards understanding the, mechanisms of hydrolytic activity, interfacial activation, and, stereoselectivity. This study was undertaken in order to provide, structural information on bacterial lipases, which is relatively limited, in comparison to that on the enzymes from other sources. RESULTS:. We have, determined the crystal structure of a triacylglycerol lipase from, Pseudomonas cepacia (PcL) in the absence of a bound inhibitor using X-ray, crystallography. The structure shows the lipase to contain an, alpha/beta-hydrolase fold and a catalytic triad comprising of residues, Ser87, His286 and Asp264. The enzyme shares several structural features, with homologous lipases from Pseudomonas glumae (PgL) and Chromobacterium, viscosum (CvL), including a calcium-binding site. The present structure of, PcL reveals a highly open conformation with a solvent-accessible active, site. This is in contrast to the structures of PgL and PcL in which the, active site is buried under a closed or partially opened 'lid', respectively. CONCLUSIONS:. PcL exhibits some structural features found in, other lipases. The presence of the Ser-His-Asp catalytic triad, an, oxyanion hole, and the opening of a helical lid suggest that this enzyme, shares the same mechanisms of catalysis and interfacial activation as, other lipases. The highly open conformation observed in this study is, likely to reflect the activated form of the lipase at an oil-water, interface. The structure suggests that the interfacial activation of, bacterial lipases involves the reorganization of secondary structures and, a large movement of the lid to expose the active site. This is similar to, the mechanism described for other well characterized fungal and mammalian, lipases.
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<StructureSection load='1oil' size='340' side='right'caption='[[1oil]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1oil]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_cepacia Burkholderia cepacia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OIL FirstGlance]. <br>
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1OIL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Burkholderia_cepacia Burkholderia cepacia] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] Structure known Active Sites: ACT and BCT. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1OIL OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oil OCA], [https://pdbe.org/1oil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oil RCSB], [https://www.ebi.ac.uk/pdbsum/1oil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oil ProSAT]</span></td></tr>
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The crystal structure of a triacylglycerol lipase from Pseudomonas cepacia reveals a highly open conformation in the absence of a bound inhibitor., Kim KK, Song HK, Shin DH, Hwang KY, Suh SW, Structure. 1997 Feb 15;5(2):173-85. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9032073 9032073]
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LIP_BURCE LIP_BURCE] Catalyzes the hydrolysis of triglycerides.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oi/1oil_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oil ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Burkholderia cepacia]]
[[Category: Burkholderia cepacia]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Triacylglycerol lipase]]
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[[Category: Kim KK]]
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[[Category: Kim, K.K.]]
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[[Category: Shin DH]]
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[[Category: Shin, D.H.]]
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[[Category: Song HK]]
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[[Category: Song, H.K.]]
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[[Category: Suh SW]]
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[[Category: Suh, S.W.]]
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[[Category: CA]]
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[[Category: hydrolase]]
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[[Category: triacylglycerol lipase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 5 16:55:46 2007''
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Current revision

STRUCTURE OF LIPASE

PDB ID 1oil

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