This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1os6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:50, 17 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1os6.png|left|200px]]
 
-
<!--
+
==Cytochrome c7 (PpcA) from Geobacter sulfurreducens==
-
The line below this paragraph, containing "STRUCTURE_1os6", creates the "Structure Box" on the page.
+
<StructureSection load='1os6' size='340' side='right'caption='[[1os6]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1os6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_sulfurreducens Geobacter sulfurreducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OS6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OS6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DXC:(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC+ACID'>DXC</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1os6| PDB=1os6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1os6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1os6 OCA], [https://pdbe.org/1os6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1os6 RCSB], [https://www.ebi.ac.uk/pdbsum/1os6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1os6 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8GGK7_GEOSN Q8GGK7_GEOSN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/os/1os6_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1os6 ConSurf].
 +
<div style="clear:both"></div>
-
===Cytochrome c7 (PpcA) from Geobacter sulfurreducens===
+
==See Also==
-
 
+
*[[Art:Cytochrome Wallpaper|Art:Cytochrome Wallpaper]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14744127}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 14744127 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_14744127}}
+
-
 
+
-
==About this Structure==
+
-
1OS6 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Geobacter_sulfurreducens Geobacter sulfurreducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OS6 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:14744127</ref><references group="xtra"/>
+
[[Category: Geobacter sulfurreducens]]
[[Category: Geobacter sulfurreducens]]
-
[[Category: Duke, N E.C.]]
+
[[Category: Large Structures]]
-
[[Category: Londer, Y Y.]]
+
[[Category: Duke NEC]]
-
[[Category: Long, W C.]]
+
[[Category: Londer YY]]
-
[[Category: Pokkuluri, P R.]]
+
[[Category: Long WC]]
-
[[Category: Schiffer, M.]]
+
[[Category: Pokkuluri PR]]
-
[[Category: Mutli-heme cytochrome]]
+
[[Category: Schiffer M]]
-
[[Category: Ppca]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:38:05 2009''
+

Current revision

Cytochrome c7 (PpcA) from Geobacter sulfurreducens

PDB ID 1os6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools