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1oxd

From Proteopedia

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Current revision (05:51, 17 April 2024) (edit) (undo)
 
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[[Image:1oxd.png|left|200px]]
 
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==Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins==
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The line below this paragraph, containing "STRUCTURE_1oxd", creates the "Structure Box" on the page.
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<StructureSection load='1oxd' size='340' side='right'caption='[[1oxd]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1oxd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cfp_marker_plasmid_pWM1009 Cfp marker plasmid pWM1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OXD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>
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{{STRUCTURE_1oxd| PDB=1oxd | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oxd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxd OCA], [https://pdbe.org/1oxd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oxd RCSB], [https://www.ebi.ac.uk/pdbsum/1oxd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oxd ProSAT]</span></td></tr>
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</table>
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===Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins===
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<!--
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<jmolCheckbox>
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The line below this paragraph, {{ABSTRACT_PUBMED_12729742}}, adds the Publication Abstract to the page
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1oxd_consurf.spt"</scriptWhenChecked>
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(as it appears on PubMed at http://www.pubmed.gov), where 12729742 is the PubMed ID number.
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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{{ABSTRACT_PUBMED_12729742}}
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oxd ConSurf].
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==About this Structure==
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<div style="clear:both"></div>
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[[1oxd]] is a 1 chain structure of [[Green Fluorescent Protein]] with sequence from [http://en.wikipedia.org/wiki/Cfp_marker_plasmid_pwm1009 Cfp marker plasmid pwm1009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OXD OCA].
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==See Also==
==See Also==
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*[[Green Fluorescent Protein]]
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*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:12729742</ref><references group="xtra"/>
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[[Category: Cfp marker plasmid pWM1009]]
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[[Category: Cfp marker plasmid pwm1009]]
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[[Category: Large Structures]]
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[[Category: Azim, M K.]]
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[[Category: Azim MK]]
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[[Category: Bae, J Hyun.]]
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[[Category: Budisa N]]
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[[Category: Budisa, N.]]
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[[Category: Holak TA]]
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[[Category: Holak, T A.]]
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[[Category: Huber R]]
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[[Category: Huber, R.]]
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[[Category: Hyun Bae J]]
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[[Category: Jung, G.]]
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[[Category: Jung G]]
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[[Category: Kim, J S.]]
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[[Category: Kim JS]]
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[[Category: Moroder, L.]]
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[[Category: Moroder L]]
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[[Category: Rubini, M.]]
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[[Category: Rubini M]]
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[[Category: Seifert, M H.]]
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[[Category: Seifert MH]]
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[[Category: Wiegand, G.]]
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[[Category: Wiegand G]]
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[[Category: Zumbusch, A.]]
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[[Category: Zumbusch A]]
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[[Category: Amino acid incorporation]]
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[[Category: Chromophore]]
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[[Category: Genetic code]]
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[[Category: Green fluorescent protein]]
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[[Category: Luminescent protein]]
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[[Category: Tryptophan]]
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Current revision

Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins

PDB ID 1oxd

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