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1p9k

From Proteopedia

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{{Seed}}
 
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[[Image:1p9k.png|left|200px]]
 
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==THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING==
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The line below this paragraph, containing "STRUCTURE_1p9k", creates the "Structure Box" on the page.
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<StructureSection load='1p9k' size='340' side='right'caption='[[1p9k]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1p9k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1o09 1o09]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P9K FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p9k OCA], [https://pdbe.org/1p9k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p9k RCSB], [https://www.ebi.ac.uk/pdbsum/1p9k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p9k ProSAT], [https://www.topsan.org/Proteins/BSGI/1p9k TOPSAN]</span></td></tr>
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{{STRUCTURE_1p9k| PDB=1p9k | SCENE= }}
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</table>
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== Function ==
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===THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING===
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[https://www.uniprot.org/uniprot/YBCJ_ECOLI YBCJ_ECOLI] Its structure and the presence of conserved basic residues indicates that it probably binds RNA.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_12837795}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 12837795 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/1p9k_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_12837795}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p9k ConSurf].
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1P9K is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1o09 1o09]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9K OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:12837795</ref><references group="xtra"/>
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[[Category: Escherichia coli K-12]]
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
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[[Category: Cygler M]]
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[[Category: Cygler, M.]]
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[[Category: Ekiel I]]
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[[Category: Ekiel, I.]]
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[[Category: Gandhi S]]
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[[Category: Gandhi, S.]]
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[[Category: Gehring K]]
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[[Category: Gehring, K.]]
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[[Category: Iannuzzi P]]
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[[Category: Iannuzzi, P.]]
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[[Category: Larocque R]]
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[[Category: Larocque, R.]]
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[[Category: Lievre C]]
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[[Category: Lievre, C.]]
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[[Category: Matte A]]
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[[Category: Matte, A.]]
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[[Category: Osborne MJ]]
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[[Category: Osborne, M J.]]
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[[Category: Volpon L]]
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[[Category: Volpon, L.]]
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[[Category: Alfal motif]]
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[[Category: Bsgi]]
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[[Category: E coli]]
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[[Category: Montreal-kingston bacterial structural genomics initiative]]
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[[Category: Rna-binding protein]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:32:46 2009''
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Current revision

THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING

PDB ID 1p9k

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