This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1pae

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1pae" [edit=sysop:move=sysop])
Current revision (05:53, 17 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1pae.png|left|200px]]
 
-
{{STRUCTURE_1pae| PDB=1pae | SCENE= }}
+
==nucleoside diphosphate kinase==
-
 
+
<StructureSection load='1pae' size='340' side='right'caption='[[1pae]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
===nucleoside diphosphate kinase===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1pae]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PAE FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_14604526}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SE:SELENIUM+ATOM'>SE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pae OCA], [https://pdbe.org/1pae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pae RCSB], [https://www.ebi.ac.uk/pdbsum/1pae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pae ProSAT]</span></td></tr>
-
[[1pae]] is a 1 chain structure of [[Nucleoside diphosphate kinase]] with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PAE OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NDKC_DICDI NDKC_DICDI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pa/1pae_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pae ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Nucleoside diphosphate kinase|Nucleoside diphosphate kinase]]
+
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:014604526</ref><references group="xtra"/>
+
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
-
[[Category: Nucleoside-diphosphate kinase]]
+
[[Category: Large Structures]]
-
[[Category: Aumelas, A.]]
+
[[Category: Aumelas A]]
-
[[Category: Bock, A.]]
+
[[Category: Bock A]]
-
[[Category: Dumas, C.]]
+
[[Category: Dumas C]]
-
[[Category: Hoh, F.]]
+
[[Category: Hoh F]]
-
[[Category: Sanchez, J F.]]
+
[[Category: Sanchez J-F]]
-
[[Category: Strub, J M.]]
+
[[Category: Strub JM]]
-
[[Category: Strub, M P.]]
+
[[Category: Strub M-P]]
-
[[Category: Selenocysteine selenomethionine]]
+
-
[[Category: Transferase]]
+

Current revision

nucleoside diphosphate kinase

PDB ID 1pae

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools