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1ppq

From Proteopedia

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[[Image:1ppq.gif|left|200px]]
 
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{{Structure
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==NMR structure of 16th module of Immune Adherence Receptor, Cr1 (Cd35)==
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|PDB= 1ppq |SIZE=350|CAPTION= <scene name='initialview01'>1ppq</scene>
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<StructureSection load='1ppq' size='340' side='right'caption='[[1ppq]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1ppq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PPQ FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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|GENE= CR1 OR C3BR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ppq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ppq OCA], [https://pdbe.org/1ppq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ppq RCSB], [https://www.ebi.ac.uk/pdbsum/1ppq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ppq ProSAT]</span></td></tr>
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}}
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</table>
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== Function ==
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'''NMR structure of 16th module of Immune Adherence Receptor, Cr1 (Cd35)'''
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[https://www.uniprot.org/uniprot/CR1_HUMAN CR1_HUMAN] Mediates cellular binding of particles and immune complexes that have activated complement.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==Overview==
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Check<jmol>
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The regulators of complement activation (RCA) are critical to health and disease because their role is to ensure that a complement-mediated immune response to infection is proportionate and targeted. Each protein contains an uninterrupted array of from four to 30 examples of the very widely occurring complement control protein (CCP, or sushi) module. The CCP modules mediate specific protein-protein and protein-carbohydrate interactions that are key to the biological function of the RCA and, paradoxically, provide binding sites for numerous pathogens. Although structural and mutagenesis studies of CCP modules have addressed some aspects of molecular recognition, there have been no studies of the role of molecular dynamics in the interaction of CCP modules with their binding partners. NMR has now been used in the first full characterization of the backbone dynamics of CCP modules. The dynamics of two individual modules-the 16th of the 30 modules of complement receptor type 1 (CD35), and the N-terminal module of membrane cofactor protein (CD46)-as well as their solution structures, are compared. Although both examples share broadly similar three-dimensional structures, many structurally equivalent residues exhibit different amplitudes and timescales of local backbone motion. In each case, however, regions of the module-surface implicated by mutagenesis as sites of interactions with other proteins include several mobile residues. This observation suggests further experiments to explore binding mechanisms and identify new binding sites.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/1ppq_consurf.spt"</scriptWhenChecked>
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==Disease==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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Known diseases associated with this structure: Blood group, Knops system OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=120620 120620]], CR1 deficiency OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=120620 120620]], Malaria, severe, resistance to OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=120620 120620]], SLE susceptibility OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=120620 120620]]
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ppq ConSurf].
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1PPQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PPQ OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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Backbone dynamics of complement control protein (CCP) modules reveals mobility in binding surfaces., O'Leary JM, Bromek K, Black GM, Uhrinova S, Schmitz C, Wang X, Krych M, Atkinson JP, Uhrin D, Barlow PN, Protein Sci. 2004 May;13(5):1238-50. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15096630 15096630]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Atkinson, J P.]]
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[[Category: Atkinson JP]]
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[[Category: Barlow, P N.]]
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[[Category: Barlow PN]]
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[[Category: Black, G M.]]
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[[Category: Black GM]]
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[[Category: Bromek, K.]]
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[[Category: Bromek K]]
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[[Category: Krych, M.]]
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[[Category: Krych M]]
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[[Category: Leary, J M.O.]]
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[[Category: O'Leary JM]]
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[[Category: Schmitz, C.]]
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[[Category: Schmitz C]]
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[[Category: Uhrin, D.]]
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[[Category: Uhrin D]]
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[[Category: Uhrinova, S.]]
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[[Category: Uhrinova S]]
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[[Category: ccp]]
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[[Category: complement]]
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[[Category: module]]
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[[Category: scr]]
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[[Category: structure]]
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[[Category: sushi]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:27:25 2008''
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Current revision

NMR structure of 16th module of Immune Adherence Receptor, Cr1 (Cd35)

PDB ID 1ppq

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