This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1q3m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:00, 17 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1q3m.png|left|200px]]
 
-
<!--
+
==1H NMR structure bundle of bovine Ca2+-osteocalcin==
-
The line below this paragraph, containing "STRUCTURE_1q3m", creates the "Structure Box" on the page.
+
<StructureSection load='1q3m' size='340' side='right'caption='[[1q3m]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1q3m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q3M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q3M FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CGU:GAMMA-CARBOXY-GLUTAMIC+ACID'>CGU</scene></td></tr>
-
{{STRUCTURE_1q3m| PDB=1q3m | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q3m OCA], [https://pdbe.org/1q3m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q3m RCSB], [https://www.ebi.ac.uk/pdbsum/1q3m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q3m ProSAT]</span></td></tr>
-
 
+
</table>
-
===1H NMR structure bundle of bovine Ca2+-osteocalcin===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/OSTCN_BOVIN OSTCN_BOVIN] Constitutes 1-2% of the total bone protein. It binds strongly to apatite and calcium.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_12820886}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12820886 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q3/1q3m_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_12820886}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1Q3M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q3M OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q3m ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
The three-dimensional structure of bovine calcium ion-bound osteocalcin using 1H NMR spectroscopy., Dowd TL, Rosen JF, Li L, Gundberg CM, Biochemistry. 2003 Jul 1;42(25):7769-79. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12820886 12820886]
+
</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Dowd, T L.]]
+
[[Category: Dowd TL]]
-
[[Category: Gundberg, C M.]]
+
[[Category: Gundberg CM]]
-
[[Category: Li, L.]]
+
[[Category: Li L]]
-
[[Category: Rosen, J F.]]
+
[[Category: Rosen JF]]
-
[[Category: Bone protein]]
+
-
[[Category: Calcium binding protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 05:37:10 2008''
+

Current revision

1H NMR structure bundle of bovine Ca2+-osteocalcin

PDB ID 1q3m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1q3m"
Personal tools