This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1q5b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:01, 17 April 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1q5b.png|left|200px]]
 
-
<!--
+
==lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography==
-
The line below this paragraph, containing "STRUCTURE_1q5b", creates the "Structure Box" on the page.
+
<SX load='1q5b' size='340' side='right' viewer='molstar' caption='[[1q5b]], [[Resolution|resolution]] 30.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1q5b]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q5B FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 30&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
-
{{STRUCTURE_1q5b| PDB=1q5b | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5b OCA], [https://pdbe.org/1q5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q5b RCSB], [https://www.ebi.ac.uk/pdbsum/1q5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5b ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/1q5b_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q5b ConSurf].
 +
<div style="clear:both"></div>
-
===lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography===
+
==See Also==
-
 
+
*[[Cadherin 3D structures|Cadherin 3D structures]]
-
 
+
__TOC__
-
<!--
+
</SX>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14526082}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 14526082 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_14526082}}
+
-
 
+
-
==About this Structure==
+
-
1Q5B is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5B OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:14526082</ref><references group="xtra"/>
+
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Cowin, P.]]
+
[[Category: Cowin P]]
-
[[Category: He, W.]]
+
[[Category: He W]]
-
[[Category: Stokes, D L.]]
+
[[Category: Stokes DL]]
-
[[Category: Adhesion]]
+
-
[[Category: Cadherin]]
+
-
[[Category: Desmosome]]
+
-
[[Category: Junction]]
+
-
[[Category: Trans interaction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:12:54 2009''
+

Current revision

lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography

1q5b, resolution 30.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1q5b"
Personal tools