This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1qd0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1qd0" [edit=sysop:move=sysop])
Current revision (06:03, 17 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1qd0.png|left|200px]]
 
-
{{STRUCTURE_1qd0| PDB=1qd0 | SCENE= }}
+
==CAMELID HEAVY CHAIN VARIABLE DOMAINS PROVIDE EFFICIENT COMBINING SITES TO HAPTENS==
-
 
+
<StructureSection load='1qd0' size='340' side='right'caption='[[1qd0]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===CAMELID HEAVY CHAIN VARIABLE DOMAINS PROVIDE EFFICIENT COMBINING SITES TO HAPTENS===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1qd0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QD0 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_10684599}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=RR6:3-HYDROXY-7-(4-{1-[2-HYDROXY-3-(2-HYDROXY-5-SULFO-PHENYLAZO)-BENZYL]-2-SULFO-ETHYLAMINO}-[1,2,5]TRIAZIN-2-YLAMINO)-2-(2-HYDROXY-5-SULFO-PHENYLAZO)-NAPTHALENE-1,8-DISULFONIC+ACID'>RR6</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qd0 OCA], [https://pdbe.org/1qd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qd0 RCSB], [https://www.ebi.ac.uk/pdbsum/1qd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qd0 ProSAT]</span></td></tr>
-
[[1qd0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QD0 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/A2KD59_LAMGL A2KD59_LAMGL]
-
<ref group="xtra">PMID:010684599</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qd/1qd0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qd0 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Lama glama]]
[[Category: Lama glama]]
-
[[Category: Brown, K.]]
+
[[Category: Large Structures]]
-
[[Category: Cambillau, C.]]
+
[[Category: Brown K]]
-
[[Category: Frenken, L G.J.]]
+
[[Category: Cambillau C]]
-
[[Category: Hermans, P.]]
+
[[Category: Frenken LGJ]]
-
[[Category: Spinelli, S.]]
+
[[Category: Hermans P]]
-
[[Category: Tegoni, M.]]
+
[[Category: Spinelli S]]
-
[[Category: Verrips, T.]]
+
[[Category: Tegoni M]]
-
[[Category: Azo-dye]]
+
[[Category: Verrips T]]
-
[[Category: Camelid vh]]
+
-
[[Category: Immune system]]
+
-
[[Category: Immunoglobulin fragment]]
+

Current revision

CAMELID HEAVY CHAIN VARIABLE DOMAINS PROVIDE EFFICIENT COMBINING SITES TO HAPTENS

PDB ID 1qd0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools