This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ql3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:04, 17 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ql3.png|left|200px]]
 
-
<!--
+
==Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the reduced state==
-
The line below this paragraph, containing "STRUCTURE_1ql3", creates the "Structure Box" on the page.
+
<StructureSection load='1ql3' size='340' side='right'caption='[[1ql3]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
{{STRUCTURE_1ql3| PDB=1ql3 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [https://pdbe.org/1ql3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ql3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ql3 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CY552_PARDE CY552_PARDE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/1ql3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ql3 ConSurf].
 +
<div style="clear:both"></div>
-
===STRUCTURE OF THE SOLUBLE DOMAIN OF CYTOCHROME C552 FROM PARACOCCUS DENITRIFICANS IN THE REDUCED STATE===
+
==See Also==
-
 
+
*[[Cytochrome c nitrite reductase|Cytochrome c nitrite reductase]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10623555}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10623555 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10623555}}
+
-
 
+
-
==About this Structure==
+
-
1QL3 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:10623555</ref><references group="xtra"/>
+
[[Category: Paracoccus denitrificans]]
[[Category: Paracoccus denitrificans]]
-
[[Category: Harrenga, A.]]
+
[[Category: Harrenga A]]
-
[[Category: Ludwig, B.]]
+
[[Category: Ludwig B]]
-
[[Category: Michel, H.]]
+
[[Category: Michel H]]
-
[[Category: Reincke, B.]]
+
[[Category: Reincke B]]
-
[[Category: Rueterjans, H.]]
+
[[Category: Rueterjans H]]
-
[[Category: Electron transfer]]
+
-
[[Category: Reduced]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 19:54:24 2009''
+

Current revision

Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the reduced state

PDB ID 1ql3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ql3"
Personal tools