This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1r7a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:10, 17 April 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1r7a.png|left|200px]]
 
-
<!--
+
==Sucrose Phosphorylase from Bifidobacterium adolescentis==
-
The line below this paragraph, containing "STRUCTURE_1r7a", creates the "Structure Box" on the page.
+
<StructureSection load='1r7a' size='340' side='right'caption='[[1r7a]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1r7a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_adolescentis Bifidobacterium adolescentis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R7A FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
{{STRUCTURE_1r7a| PDB=1r7a | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r7a OCA], [https://pdbe.org/1r7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r7a RCSB], [https://www.ebi.ac.uk/pdbsum/1r7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r7a ProSAT]</span></td></tr>
-
 
+
</table>
-
===Sucrose Phosphorylase from Bifidobacterium adolescentis===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SUCP_BIFAA SUCP_BIFAA] Catalyzes the reversible phosphorolysis of sucrose into alpha-D-glucose 1-phosphate (Glc1P) and D-fructose (PubMed:14740189, PubMed:20691225). Is involved in sucrose degradation. Also displays transglucosylation activity in vitro, by transferring the glucosyl moiety of Glc1P to a broad range of monomeric sugars, such as D- and L-arabinose, D- and L-arabitol, and xylitol (PubMed:14740189).<ref>PMID:14740189</ref> <ref>PMID:20691225</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_14756551}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14756551 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/1r7a_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_14756551}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1R7A is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_adolescentis Bifidobacterium adolescentis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R7A OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r7a ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
Crystal structure of sucrose phosphorylase from Bifidobacterium adolescentis., Sprogoe D, van den Broek LA, Mirza O, Kastrup JS, Voragen AG, Gajhede M, Skov LK, Biochemistry. 2004 Feb 10;43(5):1156-62. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14756551 14756551]
+
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Bifidobacterium adolescentis]]
[[Category: Bifidobacterium adolescentis]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Sucrose phosphorylase]]
+
[[Category: Gajhede M]]
-
[[Category: Broek, L A.M van den.]]
+
[[Category: Kastrup JS]]
-
[[Category: Gajhede, M.]]
+
[[Category: Mirza O]]
-
[[Category: Kastrup, J S.]]
+
[[Category: Skov LK]]
-
[[Category: Mirza, O.]]
+
[[Category: Sprogoe D]]
-
[[Category: Skov, L K.]]
+
[[Category: Voragen AGJ]]
-
[[Category: Sprogoe, D.]]
+
[[Category: Van den Broek LAM]]
-
[[Category: Voragen, A G.J.]]
+
-
[[Category: Beta-alpha-barrel]]
+
-
[[Category: Dimer]]
+
-
[[Category: Glycoside hydrolase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:07:21 2008''
+

Current revision

Sucrose Phosphorylase from Bifidobacterium adolescentis

PDB ID 1r7a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1r7a"
Personal tools