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1tor

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[[Image:1tor.gif|left|200px]]
 
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==MOLECULAR DYNAMICS SIMULATION FROM 2D-NMR DATA OF THE FREE ACHR MIR DECAPEPTIDE AND THE ANTIBODY-BOUND [A76]MIR ANALOGUE==
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The line below this paragraph, containing "STRUCTURE_1tor", creates the "Structure Box" on the page.
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<StructureSection load='1tor' size='340' side='right'caption='[[1tor]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1tor]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tetronarce_californica Tetronarce californica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TOR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tor FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tor OCA], [https://pdbe.org/1tor PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tor RCSB], [https://www.ebi.ac.uk/pdbsum/1tor PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tor ProSAT]</span></td></tr>
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{{STRUCTURE_1tor| PDB=1tor | SCENE= }}
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</table>
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== Function ==
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'''MOLECULAR DYNAMICS SIMULATION FROM 2D-NMR DATA OF THE FREE ACHR MIR DECAPEPTIDE AND THE ANTIBODY-BOUND [A76]MIR ANALOGUE'''
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[https://www.uniprot.org/uniprot/ACHA_TETCF ACHA_TETCF] After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
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__TOC__
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</StructureSection>
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==Overview==
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[[Category: Large Structures]]
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Monoclonal antibodies against the main immunogenic region (MIR) of the muscle acetylcholine receptor (AChR) are capable of inducing experimental myasthenia gravis (MG) in animals. The epitope of these antibodies has been localized between residues 67 and 76 of the AChR alpha-subunit. The conformation in solution of the Torpedo californica MIR peptide and of its [A76] MIR analogue have been analyzed using molecular modeling based on nmr interproton distances and J-derived phi dihedral angles. Molecular dynamics simulations including dimethyl-sulfoxide as explicit solvent have been carried out on the free MIR peptide. Calculation of the structure of the [A76]MIR analogue bound to an anti-MIR monoclonal antibody have been performed in the presence of water molecules. A tightly folded structure appears for both peptides with alpha beta-folded N-terminal N68-P-A-D71 sequence of type I in the free state and type III in the mAb6-bound state. The C-terminal sequence is folded in two different ways according to the result in the free and bound state of the peptides: two overlapping beta/beta or beta/alpha turns result in a short helical sequence in the free MIR peptide, whereas the bound analogue is folded by uncommon hydrogen bond closing an 11-membered cycle. This structural evolution is essentially the result of the reorientation of the hydrophobic side chains that are probably directly involved in peptide--antibody recognition.
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[[Category: Tetronarce californica]]
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[[Category: Cung MT]]
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==About this Structure==
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[[Category: Marraud M]]
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1TOR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Torpedo_californica Torpedo californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TOR OCA].
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[[Category: Orlewski P]]
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[[Category: Sakarellos C]]
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==Reference==
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[[Category: Sakarellos-Daistiotis M]]
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Compared structures of the free nicotinic acetylcholine receptor main immunogenic region (MIR) decapeptide and the antibody-bound [A76]MIR analogue: a molecular dynamics simulation from two-dimensional NMR data., Orlewski P, Marraud M, Cung MT, Tsikaris V, Sakarellos-Daitsiotis M, Sakarellos C, Vatzaki E, Tzartos SJ, Biopolymers. 1996;40(5):419-32. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9062066 9062066]
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[[Category: Tsikaris V]]
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[[Category: Single protein]]
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[[Category: Tzartos SJ]]
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[[Category: Torpedo californica]]
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[[Category: Vatzaki E]]
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[[Category: Cung, M T.]]
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[[Category: Marraud, M.]]
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[[Category: Orlewski, P.]]
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[[Category: Sakarellos, C.]]
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[[Category: Sakarellos-Daistiotis, M.]]
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[[Category: Tsikaris, V.]]
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[[Category: Tzartos, S J.]]
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[[Category: Vatzaki, E.]]
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[[Category: Transmembrane protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 10:11:54 2008''
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Current revision

MOLECULAR DYNAMICS SIMULATION FROM 2D-NMR DATA OF THE FREE ACHR MIR DECAPEPTIDE AND THE ANTIBODY-BOUND [A76]MIR ANALOGUE

PDB ID 1tor

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