This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bgv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:37, 1 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2bgv.png|left|200px]]
 
-
<!--
+
==X-ray structure of ferric cytochrome c-550 from Paracoccus versutus==
-
The line below this paragraph, containing "STRUCTURE_2bgv", creates the "Structure Box" on the page.
+
<StructureSection load='2bgv' size='340' side='right'caption='[[2bgv]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2bgv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_versutus Paracoccus versutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BGV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
{{STRUCTURE_2bgv| PDB=2bgv | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bgv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgv OCA], [https://pdbe.org/2bgv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bgv RCSB], [https://www.ebi.ac.uk/pdbsum/2bgv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CY550_PARVE CY550_PARVE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/2bgv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bgv ConSurf].
 +
<div style="clear:both"></div>
-
===X-RAY STRUCTURE OF FERRIC CYTOCHROME C-550 FROM PARACOCCUS VERSUTUS===
+
==See Also==
-
 
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15885094}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15885094 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15885094}}
+
-
 
+
-
==About this Structure==
+
-
2BGV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paracoccus_versutus Paracoccus versutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGV OCA].
+
-
 
+
-
==Reference==
+
-
The effect of replacing the axial methionine ligand with a lysine residue in cytochrome c-550 from Paracoccus versutus assessed by X-ray crystallography and unfolding., Worrall JA, van Roon AM, Ubbink M, Canters GW, FEBS J. 2005 May;272(10):2441-55. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15885094 15885094]
+
[[Category: Paracoccus versutus]]
[[Category: Paracoccus versutus]]
-
[[Category: Single protein]]
+
[[Category: Canters GW]]
-
[[Category: Canters, G W.]]
+
[[Category: Ubbink M]]
-
[[Category: Roon, A M.M Van.]]
+
[[Category: Van Roon A-MM]]
-
[[Category: Ubbink, M.]]
+
[[Category: Worrall JAR]]
-
[[Category: Worrall, J A.R.]]
+
-
[[Category: C-type cytochrome]]
+
-
[[Category: Electron transfer]]
+
-
[[Category: Heme group]]
+
-
[[Category: Pyrrolidone carboxylic acid]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 11:20:24 2008''
+

Current revision

X-ray structure of ferric cytochrome c-550 from Paracoccus versutus

PDB ID 2bgv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2bgv"
Personal tools