This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2caj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:38, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2caj.png|left|200px]]
 
-
<!--
+
==NikR from Helicobacter pylori in closed trans-conformation and nickel bound to 4 intermediary sites==
-
The line below this paragraph, containing "STRUCTURE_2caj", creates the "Structure Box" on the page.
+
<StructureSection load='2caj' size='340' side='right'caption='[[2caj]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2caj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CAJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
{{STRUCTURE_2caj| PDB=2caj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2caj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2caj OCA], [https://pdbe.org/2caj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2caj RCSB], [https://www.ebi.ac.uk/pdbsum/2caj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2caj ProSAT]</span></td></tr>
-
 
+
</table>
-
===NIKR FROM HELICOBACTER PYLORI IN CLOSED TRANS-CONFORMATION AND NICKEL BOUND TO 4 INTERMEDIARY SITES===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/NIKR_HELPY NIKR_HELPY] Transcriptional regulator (Potential).
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16872629}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16872629 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ca/2caj_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16872629}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2CAJ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CAJ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2caj ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:16872629</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Helicobacter pylori]]
+
[[Category: Helicobacter pylori 26695]]
-
[[Category: Dian, C.]]
+
[[Category: Large Structures]]
-
[[Category: Kapp, U.]]
+
[[Category: Dian C]]
-
[[Category: Labigne, A.]]
+
[[Category: Kapp U]]
-
[[Category: Mcsweeney, S M.]]
+
[[Category: Labigne A]]
-
[[Category: Schauer, K.]]
+
[[Category: McSweeney SM]]
-
[[Category: Terradot, L.]]
+
[[Category: Schauer K]]
-
[[Category: Acidic-adaptive response]]
+
[[Category: Terradot L]]
-
[[Category: Dna-binding]]
+
-
[[Category: Hypothetical protein]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Nickel]]
+
-
[[Category: Nickel uptake]]
+
-
[[Category: Ribbon-helix-helix]]
+
-
[[Category: Transcription regulator]]
+
-
[[Category: Transcriptional regulation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:32:11 2009''
+

Current revision

NikR from Helicobacter pylori in closed trans-conformation and nickel bound to 4 intermediary sites

PDB ID 2caj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2caj"
Personal tools