This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2je2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 1 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2je2.png|left|200px]]
 
-
<!--
+
==Cytochrome P460 from Nitrosomonas europaea - probable nonphysiological oxidized form==
-
The line below this paragraph, containing "STRUCTURE_2je2", creates the "Structure Box" on the page.
+
<StructureSection load='2je2' size='340' side='right'caption='[[2je2]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2je2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JE2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JE2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_2je2| PDB=2je2 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2je2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2je2 OCA], [https://pdbe.org/2je2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2je2 RCSB], [https://www.ebi.ac.uk/pdbsum/2je2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2je2 ProSAT]</span></td></tr>
-
 
+
</table>
-
===CYTOCHROME P460 FROM NITROSOMONAS EUROPAEA- PROBABLE NONPHYSIOLOGICAL OXIDIZED FORM===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q50927_NITER Q50927_NITER]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_17583915}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17583915 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/je/2je2_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_17583915}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2JE2 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JE2 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2je2 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:17583915</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Nitrosomonas europaea]]
[[Category: Nitrosomonas europaea]]
-
[[Category: Elmore, B O.]]
+
[[Category: Elmore BO]]
-
[[Category: Ferrara, J D.]]
+
[[Category: Ferrara JD]]
-
[[Category: Hooper, A B.]]
+
[[Category: Hooper AB]]
-
[[Category: Pearson, A R.]]
+
[[Category: Pearson AR]]
-
[[Category: Wilmot, C M.]]
+
[[Category: Wilmot CM]]
-
[[Category: Yang, C.]]
+
[[Category: Yang C]]
-
[[Category: Cross-linked heme]]
+
-
[[Category: Cytochrome p460]]
+
-
[[Category: Heme p460]]
+
-
[[Category: Metal binding protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:39:04 2009''
+

Current revision

Cytochrome P460 from Nitrosomonas europaea - probable nonphysiological oxidized form

PDB ID 2je2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools