This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2kdb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:45, 1 May 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 2kdb is ON HOLD
+
==Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A==
-
 
+
<StructureSection load='2kdb' size='340' side='right'caption='[[2kdb]]' scene=''>
-
Authors: Wu, B., Yee, A., Fares, C., Lemak, A., Gutmanas, A., Semest, A., Arrowsmith, C., Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2kdb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KDB FirstGlance]. <br>
-
Description: Solution Structure of human ubiquitin-like domain of Herp, hs144_9_85
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kdb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kdb OCA], [https://pdbe.org/2kdb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kdb RCSB], [https://www.ebi.ac.uk/pdbsum/2kdb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kdb ProSAT], [https://www.topsan.org/Proteins/NESGC/2kdb TOPSAN]</span></td></tr>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 21 10:33:35 2009''
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HERP2_HUMAN HERP2_HUMAN] Could be involved in the unfolded protein response (UPR) pathway (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/2kdb_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kdb ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Arrowsmith C]]
 +
[[Category: Dhe-Paganon S]]
 +
[[Category: Doherty R]]
 +
[[Category: Fares C]]
 +
[[Category: Gutmanas A]]
 +
[[Category: Lemak A]]
 +
[[Category: Semesi A]]
 +
[[Category: Wu B]]
 +
[[Category: Yee A]]

Current revision

Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A

PDB ID 2kdb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools