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2mrm
From Proteopedia
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==Solution structure of the rhodanese domain of YgaP from E. coli== | ==Solution structure of the rhodanese domain of YgaP from E. coli== | ||
| - | <StructureSection load='2mrm' size='340' side='right'caption='[[2mrm | + | <StructureSection load='2mrm' size='340' side='right'caption='[[2mrm]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2mrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2mrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MRM FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mrm OCA], [https://pdbe.org/2mrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mrm RCSB], [https://www.ebi.ac.uk/pdbsum/2mrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mrm ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mrm OCA], [https://pdbe.org/2mrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mrm RCSB], [https://www.ebi.ac.uk/pdbsum/2mrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mrm ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Rhodanese domains are abundant structural modules that catalyze the transfer of a sulfur atom from thiolsulfates to cyanide via formation of a covalent persulfide intermediate that is bound to an essential conserved cysteine residue. In this study, the three-dimensional structure of the rhodanese domain of YgaP from Escherichia coli was determined using solution NMR. A typical rhodanese domain fold was observed, as expected from the high homology with the catalytic domain of other sulfur transferases. The initial sulfur-transfer step and formation of the rhodanese persulfide intermediate were monitored by addition of sodium thiosulfate using two-dimensional (1)H-(15)N correlation spectroscopy. Discrete sharp signals were observed upon substrate addition, indicting fast exchange between sulfur-free and persulfide-intermediate forms. Residues exhibiting pronounced chemical shift changes were mapped to the structure, and included both substrate binding and surrounding residues. | ||
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| - | Fast conformational exchange between the sulfur-free and persulfide-bound rhodanese domain of E. coli YgaP.,Wang W, Zhou P, He Y, Yu L, Xiong Y, Tian C, Wu F Biochem Biophys Res Commun. 2014 Sep 26;452(3):817-21. doi:, 10.1016/j.bbrc.2014.09.002. Epub 2014 Sep 7. PMID:25204500<ref>PMID:25204500</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 2mrm" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Escherichia coli]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Tian | + | [[Category: Tian C]] |
| - | [[Category: Wang | + | [[Category: Wang W]] |
| - | [[Category: Wu | + | [[Category: Wu F]] |
| - | [[Category: Zhou | + | [[Category: Zhou P]] |
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Current revision
Solution structure of the rhodanese domain of YgaP from E. coli
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Categories: Escherichia coli | Large Structures | Tian C | Wang W | Wu F | Zhou P
