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2ruz

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==Solution structures of the DNA-binding domain (ZF11) of immune-related zinc-finger protein ZFAT==
==Solution structures of the DNA-binding domain (ZF11) of immune-related zinc-finger protein ZFAT==
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<StructureSection load='2ruz' size='340' side='right' caption='[[2ruz]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='2ruz' size='340' side='right'caption='[[2ruz]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2ruz]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RUZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RUZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2ruz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RUZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RUZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2eln|2eln]], [[2rut|2rut]], [[2ruu|2ruu]], [[2ruv|2ruv]], [[2ruw|2ruw]], [[2rux|2rux]], [[2ruy|2ruy]], [[2rv0|2rv0]], [[2rv1|2rv1]], [[2rv2|2rv2]], [[2rv3|2rv3]], [[2rv4|2rv4]], [[2rv5|2rv5]], [[2rv6|2rv6]], [[2rv7|2rv7]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ruz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ruz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ruz RCSB], [http://www.ebi.ac.uk/pdbsum/2ruz PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ruz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ruz OCA], [https://pdbe.org/2ruz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ruz RCSB], [https://www.ebi.ac.uk/pdbsum/2ruz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ruz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/ZFAT_HUMAN ZFAT_HUMAN]] May be involved in transcriptional regulation. Overexpression causes down-regulation of a number of genes involved in the immune response. Some genes are also up-regulated (By similarity).
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[https://www.uniprot.org/uniprot/ZFAT_HUMAN ZFAT_HUMAN] May be involved in transcriptional regulation. Overexpression causes down-regulation of a number of genes involved in the immune response. Some genes are also up-regulated (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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ZFAT is a transcriptional regulator, containing eighteen C2H2-type zinc-fingers and one AT-hook, involved in autoimmune thyroid disease, apoptosis, and immune-related cell survival. We determined the solution structures of the thirteen individual ZFAT zinc-fingers (ZF) and the tandemly arrayed zinc-fingers in the regions from ZF2 to ZF5, by NMR spectroscopy. ZFAT has eight uncommon bulged-out helix-containing zinc-fingers, and six of their structures (ZF4, ZF5, ZF6, ZF10, ZF11, and ZF13) were determined. The distribution patterns of the putative DNA-binding surface residues are different among the ZFAT zinc-fingers, suggesting the distinct DNA sequence preferences of the N-terminal and C-terminal zinc-fingers. Since ZFAT has three to five consecutive tandem zinc-fingers, which may cooperatively function as a unit, we also determined two tandemly arrayed zinc-finger structures, between ZF2 to ZF4 and ZF3 to ZF5. Our NMR spectroscopic analysis detected the interaction between ZF4 and ZF5, which are connected by an uncommon linker sequence, KKIK. The ZF4-ZF5 linker restrained the relative structural space between the two zinc-fingers in solution, unlike the other linker regions with determined structures, suggesting the involvement of the ZF4-ZF5 interfinger linker in the regulation of ZFAT function.
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Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT.,Tochio N, Umehara T, Nakabayashi K, Yoneyama M, Tsuda K, Shirouzu M, Koshiba S, Watanabe S, Kigawa T, Sasazuki T, Shirasawa S, Yokoyama S J Struct Funct Genomics. 2015 Mar 24. PMID:25801860<ref>PMID:25801860</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Kigawa, T]]
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[[Category: Homo sapiens]]
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[[Category: Tochio, N]]
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[[Category: Large Structures]]
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[[Category: Umehara, T]]
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[[Category: Kigawa T]]
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[[Category: Yokoyama, S]]
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[[Category: Tochio N]]
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[[Category: Transcription]]
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[[Category: Umehara T]]
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[[Category: Zfat]]
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[[Category: Yokoyama S]]
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[[Category: Zinc finger]]
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Current revision

Solution structures of the DNA-binding domain (ZF11) of immune-related zinc-finger protein ZFAT

PDB ID 2ruz

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