This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2v5t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2v5t" [edit=sysop:move=sysop])
Current revision (07:07, 1 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2v5t.png|left|200px]]
 
-
<!--
+
==Crystal structure of NCAM2 Ig2-3==
-
The line below this paragraph, containing "STRUCTURE_2v5t", creates the "Structure Box" on the page.
+
<StructureSection load='2v5t' size='340' side='right'caption='[[2v5t]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2v5t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V5T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V5T FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2v5t| PDB=2v5t | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v5t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v5t OCA], [https://pdbe.org/2v5t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v5t RCSB], [https://www.ebi.ac.uk/pdbsum/2v5t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v5t ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF NCAM2 IG2-3===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/NCAM2_HUMAN NCAM2_HUMAN] May play important roles in selective fasciculation and zone-to-zone projection of the primary olfactory axons.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_21300289}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21300289 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v5/2v5t_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_21300289}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[2v5t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V5T OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v5t ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:21300289</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Berezin, V.]]
+
[[Category: Large Structures]]
-
[[Category: Bock, E.]]
+
[[Category: Berezin V]]
-
[[Category: Gajhede, M.]]
+
[[Category: Bock E]]
-
[[Category: Kristensen, O.]]
+
[[Category: Gajhede M]]
-
[[Category: Kulahin, N.]]
+
[[Category: Kristensen O]]
-
[[Category: Rasmussen, K K.]]
+
[[Category: Kulahin N]]
-
[[Category: Walmod, P S.]]
+
[[Category: Rasmussen KK]]
 +
[[Category: Walmod PS]]

Current revision

Crystal structure of NCAM2 Ig2-3

PDB ID 2v5t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools