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2vgd

From Proteopedia

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[[Image:2vgd.png|left|200px]]
 
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{{STRUCTURE_2vgd| PDB=2vgd | SCENE= }}
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==Crystal structure of environmental isolated GH11 in complex with xylobiose and feruloyl-arabino-xylotriose==
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<StructureSection load='2vgd' size='340' side='right'caption='[[2vgd]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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===CRYSTAL STRUCTURE OF ENVIRONMENTAL ISOLATED GH11 IN COMPLEX WITH XYLOBIOSE AND FERULOYL-ARABINO-XYLOTRIOSE===
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2vgd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VGD FirstGlance]. <br>
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{{ABSTRACT_PUBMED_18078955}}
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FX3:5-O-[(2E)-3-(4-HYDROXY-3-METHOXYPHENYL)PROP-2-ENOYL]-ALPHA-L-RIBOFURANOSE'>FX3</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900116:4beta-beta-xylobiose'>PRD_900116</scene>, <scene name='pdbligand=PRD_900117:4beta-beta-xylotriose'>PRD_900117</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
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==About this Structure==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vgd OCA], [https://pdbe.org/2vgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vgd RCSB], [https://www.ebi.ac.uk/pdbsum/2vgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vgd ProSAT]</span></td></tr>
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[[2vgd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VGD OCA].
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</table>
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== Evolutionary Conservation ==
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==Reference==
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[[Image:Consurf_key_small.gif|200px|right]]
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<ref group="xtra">PMID:018078955</ref><references group="xtra"/>
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Check<jmol>
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[[Category: Endo-1,4-beta-xylanase]]
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vg/2vgd_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vgd ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Christakopoulos, P.]]
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[[Category: Large Structures]]
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[[Category: Dumon, C.]]
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[[Category: Christakopoulos P]]
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[[Category: Flint, J E.]]
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[[Category: Dumon C]]
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[[Category: Gilbert, H J.]]
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[[Category: Flint JE]]
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[[Category: Juge, N.]]
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[[Category: Gilbert HJ]]
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[[Category: Lewis, R J.]]
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[[Category: Juge N]]
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[[Category: Murray, J W.]]
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[[Category: Lewis RJ]]
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[[Category: Vardakou, M.]]
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[[Category: Murray JW]]
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[[Category: Weiner, D P.]]
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[[Category: Vardakou M]]
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[[Category: Beta jelly roll]]
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[[Category: Weiner DP]]
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[[Category: Glycoside hydrolase]]
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[[Category: Hydrolase]]
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[[Category: Xylanase]]
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Current revision

Crystal structure of environmental isolated GH11 in complex with xylobiose and feruloyl-arabino-xylotriose

PDB ID 2vgd

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