This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w5n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:09, 1 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2w5n.png|left|200px]]
 
-
{{STRUCTURE_2w5n| PDB=2w5n | SCENE= }}
+
==Native structure of the GH93 alpha-L-arabinofuranosidase of Fusarium graminearum==
-
 
+
<StructureSection load='2w5n' size='340' side='right'caption='[[2w5n]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
===NATIVE STRUCTURE OF THE GH93 ALPHA-L-ARABINOFURANOSIDASE OF FUSARIUM GRAMINEARUM===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2w5n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Fusarium_graminearum Fusarium graminearum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W5N FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_19269961}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w5n OCA], [https://pdbe.org/2w5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w5n RCSB], [https://www.ebi.ac.uk/pdbsum/2w5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w5n ProSAT]</span></td></tr>
-
[[2w5n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gibberella_zeae Gibberella zeae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W5N OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/I1RH17_GIBZE I1RH17_GIBZE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/2w5n_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w5n ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Arabinanase|Arabinanase]]
+
*[[Arabinanase 3D structures|Arabinanase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:019269961</ref><references group="xtra"/>
+
[[Category: Fusarium graminearum]]
-
[[Category: Alpha-N-arabinofuranosidase]]
+
[[Category: Large Structures]]
-
[[Category: Gibberella zeae]]
+
[[Category: Byrns SC]]
-
[[Category: Byrns, S C.]]
+
[[Category: Carapito R]]
-
[[Category: Carapito, R.]]
+
[[Category: Imberty A]]
-
[[Category: Imberty, A.]]
+
[[Category: Jeltsch JM]]
-
[[Category: Jeltsch, J M.]]
+
[[Category: Lowary TL]]
-
[[Category: Lowary, T L.]]
+
[[Category: Phalip V]]
-
[[Category: Phalip, V.]]
+
[[Category: Tam PH]]
-
[[Category: Tam, P H.]]
+
[[Category: Varrot A]]
-
[[Category: Varrot, A.]]
+
-
[[Category: Alpha-l-arabinofuranosidase]]
+
-
[[Category: Gh93]]
+
-
[[Category: Glycosyl hydrolase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Native structure of the GH93 alpha-L-arabinofuranosidase of Fusarium graminearum

PDB ID 2w5n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools