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5o3u

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==Structural characterization of the fast and promiscuous macrocyclase from plant - PCY1-S562A bound to Presegetalin F1==
==Structural characterization of the fast and promiscuous macrocyclase from plant - PCY1-S562A bound to Presegetalin F1==
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<StructureSection load='5o3u' size='340' side='right' caption='[[5o3u]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
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<StructureSection load='5o3u' size='340' side='right'caption='[[5o3u]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5o3u]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O3U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5O3U FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5o3u]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Gypsophila_vaccaria Gypsophila vaccaria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O3U FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5o3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o3u OCA], [http://pdbe.org/5o3u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5o3u RCSB], [http://www.ebi.ac.uk/pdbsum/5o3u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5o3u ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o3u OCA], [https://pdbe.org/5o3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o3u RCSB], [https://www.ebi.ac.uk/pdbsum/5o3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o3u ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/R4P353_GYPVA R4P353_GYPVA]
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Cyclic ribosomally derived peptides possess diverse bioactivities and are currently of major interest in drug development. However, it can be chemically challenging to synthesize these molecules, hindering the diversification and testing of cyclic peptide leads. Enzymes used in vitro offer a solution to this, however peptide macrocyclization remains the bottleneck. PCY1, involved in the biosynthesis of plant orbitides, belongs to the class of prolyl oligopeptidases and natively displays substrate promiscuity. PCY1 is a promising candidate for in vitro utilization but its substrates require an 11 to 16 residue C-terminal recognition tail. We have characterized PCY1 both kinetically and structurally with multiple substrate complexes revealing for the molecular basis of recognition and catalysis. Using these insights, we have identified a three residue C-terminal extension that replaces the natural recognition tail permitting PCY1 to operate on synthetic substrates. We demonstrate that PCY1 can macrocyclize a variety of substrates with this short tail, including unnatural amino acids and non-amino acids, highlighting PCY1's potential in biocatalysis.
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Characterization of the fast and promiscuous macrocyclase from plant PCY1 enables the use of simple substrates.,Ludewig H, Czekster CM, Oueis E, Munday ES, Arshad M, Synowsky SA, Bent AF, Naismith JH ACS Chem Biol. 2018 Jan 29. doi: 10.1021/acschembio.8b00050. PMID:29377663<ref>PMID:29377663</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5o3u" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bent, A F]]
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[[Category: Gypsophila vaccaria]]
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[[Category: Czekster, C M]]
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[[Category: Large Structures]]
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[[Category: Ludewig, H]]
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[[Category: Bent AF]]
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[[Category: Naismith, J H]]
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[[Category: Czekster CM]]
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[[Category: Beta-propeller]]
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[[Category: Ludewig H]]
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[[Category: Closed form]]
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[[Category: Naismith JH]]
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[[Category: Hydrolase]]
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[[Category: Macrocyclase]]
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[[Category: Peptidase]]
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[[Category: Prolyl oligopeptidase]]
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[[Category: Segetalin biosynthesis]]
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Current revision

Structural characterization of the fast and promiscuous macrocyclase from plant - PCY1-S562A bound to Presegetalin F1

PDB ID 5o3u

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