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1rl5

From Proteopedia

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[[Image:1rl5.gif|left|200px]]
 
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{{Structure
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==NMR structure with tightly bound water molecule of cytotoxin I from Naja oxiana in aqueous solution (major form)==
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|PDB= 1rl5 |SIZE=350|CAPTION= <scene name='initialview01'>1rl5</scene>
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<StructureSection load='1rl5' size='340' side='right'caption='[[1rl5]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[1rl5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Naja_oxiana Naja oxiana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RL5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RL5 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rl5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rl5 OCA], [https://pdbe.org/1rl5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rl5 RCSB], [https://www.ebi.ac.uk/pdbsum/1rl5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rl5 ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rl5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rl5 OCA], [http://www.ebi.ac.uk/pdbsum/1rl5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rl5 RCSB]</span>
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[https://www.uniprot.org/uniprot/3SA1_NAJOX 3SA1_NAJOX] This three-finger cytotoxin is a basic protein that interacts and penetrates into the cell membrane, with the tips of all the three loops. Cytotoxins which have a 'Pro-30' (P-type) interacts with membrane stronger that those which have a Ser-28 (S-type). CTI interacts with membrane weaker than CTII.
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''NMR structure with tightly bound water molecule of cytotoxin I from Naja oxiana in aqueous solution (major form)'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rl/1rl5_consurf.spt"</scriptWhenChecked>
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==Overview==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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The CTs (cytotoxins) I and II are positively charged three-finger folded proteins from venom of Naja oxiana (the Central Asian cobra). They belong to S- and P-type respectively based on Ser-28 and Pro-30 residues within a putative phospholipid bilayer binding site. Previously, we investigated the interaction of CTII with multilamellar liposomes of dipalmitoylphosphatidylglycerol by wide-line (31)P-NMR spectroscopy. To compare interactions of these proteins with phospholipids, we investigated the interaction of CTI with the multilamellar liposomes of dipalmitoylphosphatidylglycerol analogously. The effect of CTI on the chemical shielding anisotropy and deformation of the liposomes in the magnetic field was determined at different temperatures and lipid/protein ratios. It was found that both the proteins do not affect lipid organization in the gel state. In the liquid crystalline state of the bilayer they disturb lipid packing. To get insight into the interactions of the toxins with membranes, Monte Carlo simulations of CTI and CTII in the presence of the bilayer membrane were performed. It was found that both the toxins penetrate into the bilayer with the tips of all the three loops. However, the free-energy gain on membrane insertion of CTI is smaller (by approximately 7 kcal/mol; 1 kcal identical with 4.184 kJ) when compared with CTII, because of the lower hydrophobicity of the membrane-binding site of CTI. These results clearly demonstrate that the P-type cytotoxins interact with membranes stronger than those of the S-type, although the mode of the membrane insertion is similar for both the types.
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rl5 ConSurf].
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1RL5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Naja_oxiana Naja oxiana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RL5 OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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Interaction of three-finger toxins with phospholipid membranes: comparison of S- and P-type cytotoxins., Dubovskii PV, Lesovoy DM, Dubinnyi MA, Konshina AG, Utkin YN, Efremov RG, Arseniev AS, Biochem J. 2005 May 1;387(Pt 3):807-15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15584897 15584897]
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[[Category: Large Structures]]
[[Category: Naja oxiana]]
[[Category: Naja oxiana]]
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[[Category: Single protein]]
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[[Category: Arseniev AS]]
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[[Category: Arseniev, A S.]]
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[[Category: Dubinnyi MA]]
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[[Category: Dubinnyi, M A.]]
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[[Category: Dubovskii PV]]
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[[Category: Dubovskii, P V.]]
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[[Category: Pustovalova YE]]
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[[Category: Pustovalova, Y E.]]
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[[Category: Utkin YN]]
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[[Category: Utkin, Y N.]]
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[[Category: bound water]]
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[[Category: cis/trans isomerization]]
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[[Category: membrane perturbation]]
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[[Category: s-type cytotoxin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:29:44 2008''
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Current revision

NMR structure with tightly bound water molecule of cytotoxin I from Naja oxiana in aqueous solution (major form)

PDB ID 1rl5

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