This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rvk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:27, 1 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of enolase AGR_L_2751 from Agrobacterium Tumefaciens==
==Crystal structure of enolase AGR_L_2751 from Agrobacterium Tumefaciens==
-
<StructureSection load='1rvk' size='340' side='right' caption='[[1rvk]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='1rvk' size='340' side='right'caption='[[1rvk]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1rvk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RVK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RVK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1rvk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RVK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RVK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rvk OCA], [http://pdbe.org/1rvk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rvk RCSB], [http://www.ebi.ac.uk/pdbsum/1rvk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1rvk TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rvk OCA], [https://pdbe.org/1rvk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rvk RCSB], [https://www.ebi.ac.uk/pdbsum/1rvk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rvk ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1rvk TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7CSI0_AGRFC Q7CSI0_AGRFC]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rv/1rvk_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rv/1rvk_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 17: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rvk ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rvk ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Enolase 3D structures|Enolase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Agrt5]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Fedorov, A A]]
+
[[Category: Burley SK]]
-
[[Category: Fedorov, E V]]
+
[[Category: Fedorov AA]]
-
[[Category: Gerlt, J A]]
+
[[Category: Fedorov EV]]
-
[[Category: Millikin, C]]
+
[[Category: Gerlt JA]]
-
[[Category: Structural genomic]]
+
[[Category: Millikin C]]
-
[[Category: Thirumuruhan, R]]
+
[[Category: Thirumuruhan R]]
-
[[Category: Zencheck, W]]
+
[[Category: Zencheck W]]
-
[[Category: Enolase superfamily]]
+
-
[[Category: Mr gi-17937161]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Target t1522]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of enolase AGR_L_2751 from Agrobacterium Tumefaciens

PDB ID 1rvk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools