This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rzi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:27, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1rzi.png|left|200px]]
 
-
<!--
+
==Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab==
-
The line below this paragraph, containing "STRUCTURE_1rzi", creates the "Structure Box" on the page.
+
<StructureSection load='1rzi' size='340' side='right'caption='[[1rzi]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1rzi]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rzi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzi OCA], [https://pdbe.org/1rzi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rzi RCSB], [https://www.ebi.ac.uk/pdbsum/1rzi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzi ProSAT]</span></td></tr>
-
{{STRUCTURE_1rzi| PDB=1rzi | SCENE= }}
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rzi ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab===
+
==See Also==
-
 
+
*[[Antibody 3D structures|Antibody 3D structures]]
-
 
+
*[[Sandbox 20009|Sandbox 20009]]
-
<!--
+
*[[3D structures of human antibody|3D structures of human antibody]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_14981267}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 14981267 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_14981267}}
+
-
 
+
-
==About this Structure==
+
-
1RZI is a 16 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZI OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:14981267</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Choe, H.]]
+
[[Category: Large Structures]]
-
[[Category: Dimitrov, D S.]]
+
[[Category: Choe H]]
-
[[Category: Farzan, M.]]
+
[[Category: Dimitrov DS]]
-
[[Category: Hendrickson, W A.]]
+
[[Category: Farzan M]]
-
[[Category: Huang, C C.]]
+
[[Category: Hendrickson WA]]
-
[[Category: Kwong, P D.]]
+
[[Category: Huang CC]]
-
[[Category: Majeed, S.]]
+
[[Category: Kwong PD]]
-
[[Category: Moore, M J.]]
+
[[Category: Majeed S]]
-
[[Category: Phogat, S.]]
+
[[Category: Moore MJ]]
-
[[Category: Robinson, J.]]
+
[[Category: Phogat S]]
-
[[Category: Sodroski, J.]]
+
[[Category: Robinson J]]
-
[[Category: Venturi, M.]]
+
[[Category: Sodroski J]]
-
[[Category: Wyatt, R.]]
+
[[Category: Venturi M]]
-
[[Category: Zhang, M Y.]]
+
[[Category: Wyatt R]]
-
[[Category: Antibody]]
+
[[Category: Zhang M-Y]]
-
[[Category: Cd4i]]
+
-
[[Category: Gp120]]
+
-
[[Category: Hiv-1]]
+
-
[[Category: Tyrosine sulfation]]
+
-
[[Category: Vh-gene usage]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:50:09 2009''
+

Current revision

Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab

PDB ID 1rzi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rzi"
Personal tools