This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sd4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1sd4" [edit=sysop:move=sysop])
Current revision (08:30, 1 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1sd4.png|left|200px]]
 
-
{{STRUCTURE_1sd4| PDB=1sd4 | SCENE= }}
+
==Crystal Structure of a SeMet derivative of BlaI at 2.0 A==
-
 
+
<StructureSection load='1sd4' size='340' side='right'caption='[[1sd4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Crystal Structure of a SeMet derivative of BlaI at 2.0 A===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1sd4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SD4 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15716455}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sd4 OCA], [https://pdbe.org/1sd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sd4 RCSB], [https://www.ebi.ac.uk/pdbsum/1sd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sd4 ProSAT]</span></td></tr>
-
[[1sd4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SD4 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/BLAI_STAAU BLAI_STAAU] Transcriptional repressor that constitutively blocks expression of beta-lactamase. Binds DNA as a dimer (By similarity).
-
<ref group="xtra">PMID:015716455</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sd/1sd4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sd4 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Archer, G L.]]
+
[[Category: Archer GL]]
-
[[Category: Musayev, F N.]]
+
[[Category: Musayev FN]]
-
[[Category: Robinson, H.]]
+
[[Category: Robinson H]]
-
[[Category: Safo, M K.]]
+
[[Category: Safo MK]]
-
[[Category: Scarsdale, N.]]
+
[[Category: Scarsdale N]]
-
[[Category: Zhao, Q.]]
+
[[Category: Zhao Q]]
-
[[Category: B-lactam]]
+
-
[[Category: Blai]]
+
-
[[Category: Dna binding protein]]
+
-
[[Category: Meci]]
+
-
[[Category: Methicillin]]
+
-
[[Category: Repressor]]
+

Current revision

Crystal Structure of a SeMet derivative of BlaI at 2.0 A

PDB ID 1sd4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools