This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sqs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:34, 1 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1sqs.jpg|left|200px]]
 
-
{{Structure
+
==X-Ray Crystal Structure Protein SP1951 of Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR27.==
-
|PDB= 1sqs |SIZE=350|CAPTION= <scene name='initialview01'>1sqs</scene>, resolution 1.50&Aring;
+
<StructureSection load='1sqs' size='340' side='right'caption='[[1sqs]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>
+
<table><tr><td colspan='2'>[[1sqs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SQS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SQS FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= SP1951 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 Streptococcus pneumoniae TIGR4])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0655 WrbA]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sqs OCA], [https://pdbe.org/1sqs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sqs RCSB], [https://www.ebi.ac.uk/pdbsum/1sqs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sqs ProSAT], [https://www.topsan.org/Proteins/NESGC/1sqs TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sqs OCA], [http://www.ebi.ac.uk/pdbsum/1sqs PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1sqs RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A0A0H2URW2_STRPN A0A0H2URW2_STRPN]
-
'''X-Ray Crystal Structure Protein SP1951 of Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR27.'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
1SQS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SQS OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sq/1sqs_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Streptococcus pneumoniae tigr4]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Forouhar, F.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sqs ConSurf].
-
[[Category: Hunt, J F.]]
+
<div style="clear:both"></div>
-
[[Category: Lee, I.]]
+
__TOC__
-
[[Category: Montelione, G T.]]
+
</StructureSection>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: Tong, L.]]
+
[[Category: Streptococcus pneumoniae TIGR4]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Acton TB]]
-
[[Category: Xiao, R.]]
+
[[Category: Forouhar F]]
-
[[Category: alpha beta protein]]
+
[[Category: Hunt JF]]
-
[[Category: nesg]]
+
[[Category: Lee I]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Montelione GT]]
-
[[Category: protein structure initiative]]
+
[[Category: Tong L]]
-
[[Category: psi]]
+
[[Category: Vorobiev SM]]
-
[[Category: structural genomic]]
+
[[Category: Xiao R]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:05:47 2008''
+

Current revision

X-Ray Crystal Structure Protein SP1951 of Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR27.

PDB ID 1sqs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools