This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t3v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:38, 1 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1t3v.jpg|left|200px]]
 
-
{{Structure
+
==The NMR solution structure of TM1816==
-
|PDB= 1t3v |SIZE=350|CAPTION= <scene name='initialview01'>1t3v</scene>
+
<StructureSection load='1t3v' size='340' side='right'caption='[[1t3v]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1t3v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T3V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T3V FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= TM1816 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t3v OCA], [https://pdbe.org/1t3v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t3v RCSB], [https://www.ebi.ac.uk/pdbsum/1t3v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t3v ProSAT], [https://www.topsan.org/Proteins/JCSG/1t3v TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00851 MTH1175]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t3v OCA], [http://www.ebi.ac.uk/pdbsum/1t3v PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1t3v RCSB]</span>
+
[https://www.uniprot.org/uniprot/Q9X2D6_THEMA Q9X2D6_THEMA]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''The NMR solution structure of TM1816'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t3/1t3v_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1T3V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T3V OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==Reference==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t3v ConSurf].
-
NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima., Columbus L, Peti W, Etezady-Esfarjani T, Herrmann T, Wuthrich K, Proteins. 2005 Aug 15;60(3):552-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15937903 15937903]
+
<div style="clear:both"></div>
-
[[Category: Single protein]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Columbus, L.]]
+
[[Category: Columbus L]]
-
[[Category: Etazady, T.]]
+
[[Category: Etazady T]]
-
[[Category: Herrmann, T.]]
+
[[Category: Herrmann T]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[[Category: Klock H]]
-
[[Category: Klock, H.]]
+
[[Category: Lesley S]]
-
[[Category: Lesley, S.]]
+
[[Category: Peti W]]
-
[[Category: Peti, W.]]
+
[[Category: Wuthrich K]]
-
[[Category: Wuthrich, K.]]
+
-
[[Category: alpha-beta]]
+
-
[[Category: jcsg]]
+
-
[[Category: joint center for structural genomic]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:50:53 2008''
+

Current revision

The NMR solution structure of TM1816

PDB ID 1t3v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1t3v"
Personal tools