This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t3v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:38, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1t3v.png|left|200px]]
 
-
<!--
+
==The NMR solution structure of TM1816==
-
The line below this paragraph, containing "STRUCTURE_1t3v", creates the "Structure Box" on the page.
+
<StructureSection load='1t3v' size='340' side='right'caption='[[1t3v]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1t3v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T3V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T3V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t3v OCA], [https://pdbe.org/1t3v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t3v RCSB], [https://www.ebi.ac.uk/pdbsum/1t3v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t3v ProSAT], [https://www.topsan.org/Proteins/JCSG/1t3v TOPSAN]</span></td></tr>
-
{{STRUCTURE_1t3v| PDB=1t3v | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===The NMR solution structure of TM1816===
+
[https://www.uniprot.org/uniprot/Q9X2D6_THEMA Q9X2D6_THEMA]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1T3V is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T3V OCA].
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t3/1t3v_consurf.spt"</scriptWhenChecked>
-
==Reference==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima., Columbus L, Peti W, Etezady-Esfarjani T, Herrmann T, Wuthrich K, Proteins. 2005 Aug 15;60(3):552-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15937903 15937903]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t3v ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Columbus, L.]]
+
[[Category: Columbus L]]
-
[[Category: Etazady, T.]]
+
[[Category: Etazady T]]
-
[[Category: Herrmann, T.]]
+
[[Category: Herrmann T]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[[Category: Klock H]]
-
[[Category: Klock, H.]]
+
[[Category: Lesley S]]
-
[[Category: Lesley, S.]]
+
[[Category: Peti W]]
-
[[Category: Peti, W.]]
+
[[Category: Wuthrich K]]
-
[[Category: Wuthrich, K.]]
+
-
[[Category: Alpha-beta]]
+
-
[[Category: Jcsg]]
+
-
[[Category: Joint center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:44:07 2008''
+

Current revision

The NMR solution structure of TM1816

PDB ID 1t3v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools