This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1to3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:42, 1 May 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1to3.gif|left|200px]]
 
-
{{Structure
+
==Structure of yiht from Salmonella typhimurium==
-
|PDB= 1to3 |SIZE=350|CAPTION= <scene name='initialview01'>1to3</scene>, resolution 2.70&Aring;
+
<StructureSection load='1to3' size='340' side='right'caption='[[1to3]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=BR:BROMIDE ION'>BR</scene>
+
<table><tr><td colspan='2'>[[1to3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TO3 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
|GENE= YIHT, STM4022 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=602 Salmonella typhimurium])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1to3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1to3 OCA], [https://pdbe.org/1to3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1to3 RCSB], [https://www.ebi.ac.uk/pdbsum/1to3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1to3 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1to3 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Structure of yiht from Salmonella typhimurium'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SQUT_SALTY SQUT_SALTY] Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA).[HAMAP-Rule:MF_01912]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1TO3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TO3 OCA].
+
Check<jmol>
-
[[Category: Salmonella typhimurium]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/to/1to3_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Gorman, J.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
</jmolCheckbox>
-
[[Category: Shapiro, L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1to3 ConSurf].
-
[[Category: BR]]
+
<div style="clear:both"></div>
-
[[Category: PO4]]
+
__TOC__
-
[[Category: beta-alpha barrel]]
+
</StructureSection>
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Large Structures]]
-
[[Category: nysgxrc]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: protein structure initiative]]
+
[[Category: Burley SK]]
-
[[Category: psi]]
+
[[Category: Gorman J]]
-
[[Category: structural genomic]]
+
[[Category: Shapiro L]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:20:59 2008''
+

Current revision

Structure of yiht from Salmonella typhimurium

PDB ID 1to3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools