This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1u0k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:45, 1 May 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1u0k.jpg|left|200px]]
 
-
{{Structure
+
==The structure of a Predicted Epimerase PA4716 from Pseudomonas aeruginosa==
-
|PDB= 1u0k |SIZE=350|CAPTION= <scene name='initialview01'>1u0k</scene>, resolution 1.50&Aring;
+
<StructureSection load='1u0k' size='340' side='right'caption='[[1u0k]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1u0k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U0K FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= PA4716 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 Pseudomonas aeruginosa PAO1])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u0k OCA], [https://pdbe.org/1u0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u0k RCSB], [https://www.ebi.ac.uk/pdbsum/1u0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u0k ProSAT], [https://www.topsan.org/Proteins/MCSG/1u0k TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''The structure of a Predicted Epimerase PA4716 from Pseudomonas aeruginosa'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9HV82_PSEAE Q9HV82_PSEAE]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1U0K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U0K OCA].
+
Check<jmol>
-
[[Category: Pseudomonas aeruginosa pao1]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u0/1u0k_consurf.spt"</scriptWhenChecked>
-
[[Category: Cuff, M E.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Ginell, S J.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u0k ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Rotella, F J.]]
+
__TOC__
-
[[Category: Savchenko, A.]]
+
</StructureSection>
-
[[Category: Xu, X.]]
+
[[Category: Large Structures]]
-
[[Category: mcsg]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Cuff ME]]
-
[[Category: protein structure initiative]]
+
[[Category: Edwards A]]
-
[[Category: pseudomonas aeruginosa]]
+
[[Category: Ginell SL]]
-
[[Category: psi]]
+
[[Category: Joachimiak A]]
-
[[Category: sctructural genomic]]
+
[[Category: Rotella FJ]]
-
[[Category: structural genomic]]
+
[[Category: Savchenko A]]
-
 
+
[[Category: Xu X]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:25:42 2008''
+

Current revision

The structure of a Predicted Epimerase PA4716 from Pseudomonas aeruginosa

PDB ID 1u0k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools