1e7n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1e7n" size="450" color="white" frame="true" align="right" spinBox="true" caption="1e7n, resolution 2.35&Aring;" /> '''THE N-TERMINAL DOMAI...)
Current revision (08:47, 9 May 2024) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1e7n.jpg|left|200px]]<br /><applet load="1e7n" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1e7n, resolution 2.35&Aring;" />
 
-
'''THE N-TERMINAL DOMAIN OF BETA-B2-CRYSTALLIN RESEMBLES THE PUTATIVE ANCESTRAL HOMODIMER'''<br />
 
-
==Overview==
+
==The N-terminal domain of beta-B2-crystallin resembles the putative ancestral homodimer==
-
betagamma-crystallins from the eye lens are proteins consisting of two, similar domains joined by a short linker. All three-dimensional structures, of native proteins solved so far reveal similar pseudo-2-fold pairing of, the domains reflecting their presumed ancient origin from a single-domain, homodimer. However, studies of engineered single domains of members of the, betagamma-crystallin superfamily have not revealed a prototype ancestral, solution homodimer. Here we report the 2.35 A X-ray structure of the, homodimer of the N-terminal domain of rat betaB2-crystallin (betaB2-N)., The two identical domains pair in a symmetrical manner very similar to, that observed in native betagamma-crystallins, where N and C-terminal, domains (which share approximately 35% sequence identity) are related by a, pseudo-2-fold axis. betaB2-N thus resembles the ancestral prototype of the, betagamma-crystallin superfamily as it self-associates in solution to form, a dimer with an essentially identical domain interface as that between the, N and C domains in betagamma-crystallins, but without the benefit of a, covalent linker. The structure provides further evidence for the role of, two-domain pairing in stabilising the protomer fold. These results support, the view that the betagamma-crystallin superfamily has evolved by a series, of gene duplication and fusion events from a single-domain ancestor, capable of forming homodimers.
+
<StructureSection load='1e7n' size='340' side='right'caption='[[1e7n]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1e7n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E7N FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e7n OCA], [https://pdbe.org/1e7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e7n RCSB], [https://www.ebi.ac.uk/pdbsum/1e7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e7n ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CRBB2_MOUSE CRBB2_MOUSE] Crystallins are the dominant structural components of the vertebrate eye lens.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e7/1e7n_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e7n ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
betagamma-crystallins from the eye lens are proteins consisting of two similar domains joined by a short linker. All three-dimensional structures of native proteins solved so far reveal similar pseudo-2-fold pairing of the domains reflecting their presumed ancient origin from a single-domain homodimer. However, studies of engineered single domains of members of the betagamma-crystallin superfamily have not revealed a prototype ancestral solution homodimer. Here we report the 2.35 A X-ray structure of the homodimer of the N-terminal domain of rat betaB2-crystallin (betaB2-N). The two identical domains pair in a symmetrical manner very similar to that observed in native betagamma-crystallins, where N and C-terminal domains (which share approximately 35% sequence identity) are related by a pseudo-2-fold axis. betaB2-N thus resembles the ancestral prototype of the betagamma-crystallin superfamily as it self-associates in solution to form a dimer with an essentially identical domain interface as that between the N and C domains in betagamma-crystallins, but without the benefit of a covalent linker. The structure provides further evidence for the role of two-domain pairing in stabilising the protomer fold. These results support the view that the betagamma-crystallin superfamily has evolved by a series of gene duplication and fusion events from a single-domain ancestor capable of forming homodimers.
-
==About this Structure==
+
The N-terminal domain of betaB2-crystallin resembles the putative ancestral homodimer.,Clout NJ, Basak A, Wieligmann K, Bateman OA, Jaenicke R, Slingsby C J Mol Biol. 2000 Dec 1;304(3):253-7. PMID:11090271<ref>PMID:11090271</ref>
-
1E7N is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1E7N OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
The N-terminal domain of betaB2-crystallin resembles the putative ancestral homodimer., Clout NJ, Basak A, Wieligmann K, Bateman OA, Jaenicke R, Slingsby C, J Mol Biol. 2000 Dec 1;304(3):253-7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11090271 11090271]
+
</div>
-
[[Category: Mus musculus]]
+
<div class="pdbe-citations 1e7n" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Basak, A.]]
+
-
[[Category: Bateman, O.A.]]
+
-
[[Category: Clout, N.J.]]
+
-
[[Category: Jaenicke, R.]]
+
-
[[Category: Slingsby, C.]]
+
-
[[Category: Wieligmann, K.]]
+
-
[[Category: 2-fold symmetry]]
+
-
[[Category: crystallins]]
+
-
[[Category: domain interactions]]
+
-
[[Category: eye lens]]
+
-
[[Category: protein structure]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 13:49:02 2007''
+
==See Also==
 +
*[[Crystallin 3D structures|Crystallin 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Mus musculus]]
 +
[[Category: Basak A]]
 +
[[Category: Bateman OA]]
 +
[[Category: Clout NJ]]
 +
[[Category: Jaenicke R]]
 +
[[Category: Slingsby C]]
 +
[[Category: Wieligmann K]]

Current revision

The N-terminal domain of beta-B2-crystallin resembles the putative ancestral homodimer

PDB ID 1e7n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools