1hg3

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[[Image:1hg3.gif|left|200px]]<br />
 
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<applet load="1hg3" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1hg3, resolution 2.7&Aring;" />
 
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'''CRYSTAL STRUCTURE OF TETRAMERIC TIM FROM PYROCOCCUS WOESEI.'''<br />
 
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==Overview==
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==Crystal structure of tetrameric TIM from Pyrococcus woesei.==
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Comparative structural studies on proteins derived from organisms with, growth optima ranging from 15 to 100 degrees C are beginning to shed light, on the mechanisms of protein thermoadaptation. One means of sustaining, hyperthermostability is for proteins to exist in higher oligomeric forms, than their mesophilic homologues. Triosephosphate isomerase (TIM) is one, of the most studied enzymes, whose fold represents one of nature's most, common protein architectures. Most TIMs are dimers of approximately 250, amino acid residues per monomer. Here, we report the 2.7 A resolution, crystal structure of the extremely thermostable TIM from Pyrococcus, woesei, a hyperthermophilic archaeon growing optimally at 100 degrees C, representing the first archaeal TIM structure. P. woesei TIM exists as a, tetramer comprising monomers of only 228 amino acid residues. Structural, comparisons with other less thermostable TIMs show that although the, central beta-barrel is largely conserved, severe pruning of several, helices and truncation of some loops give rise to a much more compact, monomer in the small hyperthermophilic TIM. The classical TIM dimer, formation is conserved in P. woesei TIM. The extreme thermostability of, PwTIM appears to be achieved by the creation of a compact tetramer where, two classical TIM dimers interact via an extensive hydrophobic interface., The tetramer is formed through largely hydrophobic interactions between, some of the pruned helical regions. The equivalent helical regions in less, thermostable dimeric TIMs represent regions of high average temperature, factor. The PwTIM seems to have removed these regions of potential, instability in the formation of the tetramer. This study of PwTIM provides, further support for the role of higher oligomerisation states in extreme, thermal stabilisation.
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<StructureSection load='1hg3' size='340' side='right'caption='[[1hg3]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1hg3]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_woesei Pyrococcus woesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HG3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HG3 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3PP:3-PHOSPHONOPROPANOIC+ACID'>3PP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hg3 OCA], [https://pdbe.org/1hg3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hg3 RCSB], [https://www.ebi.ac.uk/pdbsum/1hg3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hg3 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TPIS_PYRWO TPIS_PYRWO]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hg/1hg3_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hg3 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Comparative structural studies on proteins derived from organisms with growth optima ranging from 15 to 100 degrees C are beginning to shed light on the mechanisms of protein thermoadaptation. One means of sustaining hyperthermostability is for proteins to exist in higher oligomeric forms than their mesophilic homologues. Triosephosphate isomerase (TIM) is one of the most studied enzymes, whose fold represents one of nature's most common protein architectures. Most TIMs are dimers of approximately 250 amino acid residues per monomer. Here, we report the 2.7 A resolution crystal structure of the extremely thermostable TIM from Pyrococcus woesei, a hyperthermophilic archaeon growing optimally at 100 degrees C, representing the first archaeal TIM structure. P. woesei TIM exists as a tetramer comprising monomers of only 228 amino acid residues. Structural comparisons with other less thermostable TIMs show that although the central beta-barrel is largely conserved, severe pruning of several helices and truncation of some loops give rise to a much more compact monomer in the small hyperthermophilic TIM. The classical TIM dimer formation is conserved in P. woesei TIM. The extreme thermostability of PwTIM appears to be achieved by the creation of a compact tetramer where two classical TIM dimers interact via an extensive hydrophobic interface. The tetramer is formed through largely hydrophobic interactions between some of the pruned helical regions. The equivalent helical regions in less thermostable dimeric TIMs represent regions of high average temperature factor. The PwTIM seems to have removed these regions of potential instability in the formation of the tetramer. This study of PwTIM provides further support for the role of higher oligomerisation states in extreme thermal stabilisation.
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==About this Structure==
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Tiny TIM: a small, tetrameric, hyperthermostable triosephosphate isomerase.,Walden H, Bell GS, Russell RJ, Siebers B, Hensel R, Taylor GL J Mol Biol. 2001 Mar 2;306(4):745-57. PMID:11243785<ref>PMID:11243785</ref>
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1HG3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_woesei Pyrococcus woesei] with 3PP as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] Structure known Active Sites: PP1, PP2, PP3, PP4, PP5, PP6, PP7 and PP8. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1HG3 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Tiny TIM: a small, tetrameric, hyperthermostable triosephosphate isomerase., Walden H, Bell GS, Russell RJ, Siebers B, Hensel R, Taylor GL, J Mol Biol. 2001 Mar 2;306(4):745-57. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11243785 11243785]
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</div>
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[[Category: Pyrococcus woesei]]
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<div class="pdbe-citations 1hg3" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Triose-phosphate isomerase]]
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[[Category: Bell, G.S.]]
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[[Category: Hensel, R.]]
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[[Category: Russell, R.J.M.]]
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[[Category: Siebers, B.]]
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[[Category: Taylor, G.L.]]
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[[Category: Walden, H.]]
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[[Category: 3PP]]
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[[Category: pyrococcus]]
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[[Category: tetrameric]]
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[[Category: thermostability]]
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[[Category: triosephosphate isomerase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 5 16:36:01 2007''
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==See Also==
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*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pyrococcus woesei]]
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[[Category: Bell GS]]
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[[Category: Hensel R]]
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[[Category: Russell RJM]]
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[[Category: Siebers B]]
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[[Category: Taylor GL]]
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[[Category: Walden H]]

Current revision

Crystal structure of tetrameric TIM from Pyrococcus woesei.

PDB ID 1hg3

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