This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ods

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 9 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
==CEPHALOSPORIN C DEACETYLASE FROM BACILLUS SUBTILIS==
+
 
-
<StructureSection load='1ods' size='340' side='right' caption='[[1ods]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
==Cephalosporin C deacetylase from Bacillus subtilis==
 +
<StructureSection load='1ods' size='340' side='right'caption='[[1ods]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1ods]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ODS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ODS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1ods]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ODS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ODS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1l7a|1l7a]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cephalosporin-C_deacetylase Cephalosporin-C deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.41 3.1.1.41] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ods FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ods OCA], [https://pdbe.org/1ods PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ods RCSB], [https://www.ebi.ac.uk/pdbsum/1ods PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ods ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ods FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ods OCA], [http://pdbe.org/1ods PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ods RCSB], [http://www.ebi.ac.uk/pdbsum/1ods PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CAH_BACSU CAH_BACSU]] Esterase that removed acetyl groups from a number of O-acetylated small substrates, such as acetylated xylose, short xylooligosaccharides and cephalosporin C. Has no activity towards polymeric acetylated xylan. Cannot cleave amide linkages.<ref>PMID:12842474</ref>
+
[https://www.uniprot.org/uniprot/CAH_BACSU CAH_BACSU] Esterase that removed acetyl groups from a number of O-acetylated small substrates, such as acetylated xylose, short xylooligosaccharides and cephalosporin C. Has no activity towards polymeric acetylated xylan. Cannot cleave amide linkages.<ref>PMID:12842474</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/1ods_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/1ods_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ods ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 33: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus globigii migula 1900]]
+
[[Category: Bacillus subtilis]]
-
[[Category: Cephalosporin-C deacetylase]]
+
[[Category: Large Structures]]
-
[[Category: Brannigan, J A]]
+
[[Category: Brannigan JA]]
-
[[Category: Charnock, S J]]
+
[[Category: Charnock SJ]]
-
[[Category: Davies, G J]]
+
[[Category: Davies GJ]]
-
[[Category: Gilbert, H J]]
+
[[Category: Gilbert HJ]]
-
[[Category: Offen, W A]]
+
[[Category: Offen WA]]
-
[[Category: Pell, G]]
+
[[Category: Pell G]]
-
[[Category: Roberts, S]]
+
[[Category: Roberts S]]
-
[[Category: Scott, D J]]
+
[[Category: Scott DJ]]
-
[[Category: Turkenburg, J P]]
+
[[Category: Turkenburg JP]]
-
[[Category: Verschueren, K H.G]]
+
[[Category: Verschueren KHG]]
-
[[Category: Vincent, F]]
+
[[Category: Vincent F]]
-
[[Category: Acetylxylan]]
+
-
[[Category: Alpha/beta hydrolase]]
+
-
[[Category: Carbohydrate esterase]]
+
-
[[Category: Cephalosporin]]
+
-
[[Category: Hydrolase]]
+

Current revision

Cephalosporin C deacetylase from Bacillus subtilis

PDB ID 1ods

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools