This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2k5v
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==SOLUTION NMR STRUCTURE OF the second OB-fold domain of replication protein A from Methanococcus maripaludis. NORTHEAST STRUCTURAL GENOMICS TARGET MrR110B.== | ==SOLUTION NMR STRUCTURE OF the second OB-fold domain of replication protein A from Methanococcus maripaludis. NORTHEAST STRUCTURAL GENOMICS TARGET MrR110B.== | ||
| - | <StructureSection load='2k5v' size='340' side='right' caption='[[2k5v | + | <StructureSection load='2k5v' size='340' side='right'caption='[[2k5v]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2k5v]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2k5v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5V FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5v OCA], [https://pdbe.org/2k5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5v RCSB], [https://www.ebi.ac.uk/pdbsum/2k5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5v ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5v TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q6LYF9_METMP Q6LYF9_METMP] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5v_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5v_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k5v ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Acton | + | [[Category: Methanococcus maripaludis]] |
| - | [[Category: Aramini | + | [[Category: Acton TB]] |
| - | [[Category: Ciccosanti | + | [[Category: Aramini JM]] |
| - | [[Category: Everett | + | [[Category: Ciccosanti C]] |
| - | [[Category: Jiang | + | [[Category: Everett JK]] |
| - | [[Category: Maglaqui | + | [[Category: Jiang M]] |
| - | [[Category: Montelione | + | [[Category: Maglaqui M]] |
| - | + | [[Category: Montelione GT]] | |
| - | [[Category: Nair | + | [[Category: Nair R]] |
| - | [[Category: Rost | + | [[Category: Rost B]] |
| - | [[Category: Swapna | + | [[Category: Swapna GVT]] |
| - | [[Category: Xiao | + | [[Category: Xiao R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
SOLUTION NMR STRUCTURE OF the second OB-fold domain of replication protein A from Methanococcus maripaludis. NORTHEAST STRUCTURAL GENOMICS TARGET MrR110B.
| |||||||||||
Categories: Large Structures | Methanococcus maripaludis | Acton TB | Aramini JM | Ciccosanti C | Everett JK | Jiang M | Maglaqui M | Montelione GT | Nair R | Rost B | Swapna GVT | Xiao R
