This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2khr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:47, 9 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2khr.png|left|200px]]
 
-
<!--
+
==Solution structure of Rv2377c, a MbtH-like protein from Mycobacterium tuberculosis==
-
The line below this paragraph, containing "STRUCTURE_2khr", creates the "Structure Box" on the page.
+
<StructureSection load='2khr' size='340' side='right'caption='[[2khr]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2khr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khr OCA], [https://pdbe.org/2khr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khr RCSB], [https://www.ebi.ac.uk/pdbsum/2khr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khr ProSAT]</span></td></tr>
-
{{STRUCTURE_2khr| PDB=2khr | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MBTH_MYCTU MBTH_MYCTU] Could be involved in mycobactin synthesis (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/2khr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2khr ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The Mycobacterium tuberculosis protein Rv2377c (71 residues, MW=8.4kDa) has been characterized using nuclear magnetic resonance (NMR) and circular dichroism (CD) spectroscopy. Rv2377c was the first identified member of the MbtH-like family of proteins. MbtH-like proteins have been implicated in siderophore biosynthesis, however, their precise biochemical function remain unknown. Size exclusion chromatography and NMR spectroscopy show that Rv2377c is a monomer in solution. Circular dichroism spectroscopy indicates that Rv2377c unfolds upon heating and will reversibly fold into its native conformation upon cooling. Using NMR-based methods the solution structure of Rv2377c was determined and some of the dynamic properties of the protein studied. The protein contains a three-strand, anti-parallel beta-sheet (beta3:beta1:beta2) nestled against one C-terminal alpha-helix (S44-N55). Weak or absent amide cross peaks in the (1)H-(15)N HSQC spectrum for many of the beta1 and beta2 residues suggest intermediate motion on the ms to mus time scale at the beta1:beta2 interface. Amide cross peaks in the (1)H-(15)N HSQC spectrum are absent for all but one residue at the C-terminus (W56-D71), a region that includes a highly conserved sequence WXDXR, suggesting this region is intrinsically disordered. The latter observation differs with the crystal structure of another MbtH-like protein, PA2412 from Pseudomonas aeruginosa, where a second ordered alpha-helix was observed at the extreme C-terminus.
-
===Solution structure of Rv2377c, a MbtH-like protein from Mycobacterium tuberculosis===
+
Solution structure of Rv2377c-founding member of the MbtH-like protein family.,Buchko GW, Kim CY, Terwilliger TC, Myler PJ Tuberculosis (Edinb). 2010 Jul;90(4):245-51. PMID:20434955<ref>PMID:20434955</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20434955}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2khr" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20434955 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_20434955}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2KHR is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHR OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:20434955</ref><references group="xtra"/>
+
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
-
[[Category: Buchko, G W.]]
+
[[Category: Buchko GW]]
-
[[Category: Kim, C Y.]]
+
[[Category: Kim CY]]
-
[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
+
[[Category: Terwilliger TC]]
-
[[Category: Terwilliger, T C.]]
+
-
[[Category: 2-hydroxyphenyloxazoline]]
+
-
[[Category: Biosynthetic protein]]
+
-
[[Category: Mtbh-like]]
+
-
[[Category: Mycobactin]]
+
-
[[Category: Seattle structural genomics center for infectious disease]]
+
-
[[Category: Siderophore]]
+
-
[[Category: Ssgcid]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Tuberculosis]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Aug 12 00:02:55 2010''
+

Current revision

Solution structure of Rv2377c, a MbtH-like protein from Mycobacterium tuberculosis

PDB ID 2khr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools