This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w1j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2w1j" [edit=sysop:move=sysop])
Current revision (10:06, 9 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2w1j.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF SORTASE C-1 (SRTC-1) from Streptococcus pneumoniae==
-
The line below this paragraph, containing "STRUCTURE_2w1j", creates the "Structure Box" on the page.
+
<StructureSection load='2w1j' size='340' side='right'caption='[[2w1j]], [[Resolution|resolution]] 1.24&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2w1j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W1J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W1J FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.24&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_2w1j| PDB=2w1j | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w1j OCA], [https://pdbe.org/2w1j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w1j RCSB], [https://www.ebi.ac.uk/pdbsum/2w1j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w1j ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0H2UNQ9_STRPN A0A0H2UNQ9_STRPN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Streptococcus pneumoniae is a piliated pathogen whose ability to circumvent vaccination and antibiotic treatment strategies is a cause of mortality worldwide. Pili play important roles in pneumococcal infection, but little is known about their biogenesis mechanism or the relationship between components of the pilus-forming machinery, which includes the fiber pilin (RrgB), two minor pilins (RrgA, RrgC), and three sortases (SrtC-1, SrtC-2, SrtC-3). Here we show that SrtC-1 is the main pilus-polymerizing transpeptidase, and electron microscopy analyses of RrgB fibers reconstituted in vitro reveal that they structurally mimic the pneumococcal pilus backbone. Crystal structures of both SrtC-1 and SrtC-3 reveal active sites whose access is controlled by flexible lids, unlike in non-pilus sortases, and suggest that substrate specificity is dictated by surface recognition coupled to lid opening. The distinct structural features of pilus-forming sortases suggest a common pilus biogenesis mechanism that could be exploited for the development of broad-spectrum antibacterials.
-
===CRYSTAL STRUCTURE OF SORTASE C-1 (SRTC-1) FROM STREPTOCOCCUS PNEUMONIAE===
+
Sortase-Mediated Pilus Fiber Biogenesis in Streptococcus pneumoniae.,Manzano C, Contreras-Martel C, El Mortaji L, Izore T, Fenel D, Vernet T, Schoehn G, Di Guilmi AM, Dessen A Structure. 2008 Dec 12;16(12):1838-48. PMID:19081060<ref>PMID:19081060</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_19081060}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2w1j" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19081060 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_19081060}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2w1j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W1J OCA].
+
[[Category: Streptococcus pneumoniae TIGR4]]
-
 
+
[[Category: Contreras-Martel C]]
-
==Reference==
+
[[Category: Dessen A]]
-
<ref group="xtra">PMID:019081060</ref><references group="xtra"/>
+
[[Category: Di Guilmi AM]]
-
[[Category: Peptidyltransferase]]
+
[[Category: El Mortaji L]]
-
[[Category: Streptococcus pneumoniae]]
+
[[Category: Fenel D]]
-
[[Category: Contreras-Martel, C.]]
+
[[Category: Izore T]]
-
[[Category: Dessen, A.]]
+
[[Category: Manzano C]]
-
[[Category: Fenel, D.]]
+
[[Category: Schoehn G]]
-
[[Category: Guilmi, A M.Di.]]
+
[[Category: Vernet T]]
-
[[Category: Izore, T.]]
+
-
[[Category: Manzano, C.]]
+
-
[[Category: Mortaji, L El.]]
+
-
[[Category: Schoehn, G.]]
+
-
[[Category: Vernet, T.]]
+
-
[[Category: Pathogenicity]]
+
-
[[Category: Transferase]]
+

Current revision

CRYSTAL STRUCTURE OF SORTASE C-1 (SRTC-1) from Streptococcus pneumoniae

PDB ID 2w1j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools