This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5bvk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:43, 9 May 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Fragment-based discovery of potent and selective DDR1/2 inhibitors==
==Fragment-based discovery of potent and selective DDR1/2 inhibitors==
-
<StructureSection load='5bvk' size='340' side='right' caption='[[5bvk]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
+
<StructureSection load='5bvk' size='340' side='right'caption='[[5bvk]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5bvk]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BVK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BVK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5bvk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BVK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BVK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4VC:1-(2-CHLOROPHENYL)-3-(PYRIDIN-3-YLMETHYL)UREA'>4VC</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Receptor_protein-tyrosine_kinase Receptor protein-tyrosine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.1 2.7.10.1] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4VC:1-(2-CHLOROPHENYL)-3-(PYRIDIN-3-YLMETHYL)UREA'>4VC</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bvk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5bvk RCSB], [http://www.ebi.ac.uk/pdbsum/5bvk PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bvk OCA], [https://pdbe.org/5bvk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bvk RCSB], [https://www.ebi.ac.uk/pdbsum/5bvk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bvk ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DDR1_HUMAN DDR1_HUMAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 5bvk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Epithelial discoidin domain-containing receptor|Epithelial discoidin domain-containing receptor]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Receptor protein-tyrosine kinase]]
+
[[Category: Homo sapiens]]
-
[[Category: Berdini, V]]
+
[[Category: Large Structures]]
-
[[Category: Buck, I]]
+
[[Category: Berdini V]]
-
[[Category: Carr, M]]
+
[[Category: Buck I]]
-
[[Category: Cleasby, A]]
+
[[Category: Carr M]]
-
[[Category: Coyle, J]]
+
[[Category: Cleasby A]]
-
[[Category: Curry, J]]
+
[[Category: Coyle J]]
-
[[Category: Day, J]]
+
[[Category: Curry J]]
-
[[Category: Hearn, K]]
+
[[Category: Day J]]
-
[[Category: Iqbal, A]]
+
[[Category: Hearn K]]
-
[[Category: Kirsten, T]]
+
[[Category: Iqbal A]]
-
[[Category: Lee, L]]
+
[[Category: Kirsten T]]
-
[[Category: Martins, V]]
+
[[Category: Lee L]]
-
[[Category: Mortenson, P]]
+
[[Category: Martins V]]
-
[[Category: Munck, J]]
+
[[Category: Mortenson P]]
-
[[Category: Murray, C]]
+
[[Category: Munck J]]
-
[[Category: Page, L]]
+
[[Category: Murray C]]
-
[[Category: Patel, S]]
+
[[Category: Page L]]
-
[[Category: Roomans, S]]
+
[[Category: Patel S]]
-
[[Category: Saxty, G]]
+
[[Category: Roomans S]]
-
[[Category: Ddr1]]
+
[[Category: Saxty G]]
-
[[Category: Transferase]]
+

Current revision

Fragment-based discovery of potent and selective DDR1/2 inhibitors

PDB ID 5bvk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools