This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5cm2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:45, 9 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
==Insights into molecular plasticity in protein complexes from Trm9-Trm112 tRNA modifying enzyme crystal structure==
+
==Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs==
<StructureSection load='5cm2' size='340' side='right'caption='[[5cm2]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='5cm2' size='340' side='right'caption='[[5cm2]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5cm2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Candida_lipolytica Candida lipolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CM2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5cm2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yarrowia_lipolytica_CLIB122 Yarrowia lipolytica CLIB122]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CM2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4qtt|4qtt]], [[4qtu|4qtu]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YALI0_D12837g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284591 Candida lipolytica]), YALI0_E24761g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284591 Candida lipolytica])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cm2 OCA], [https://pdbe.org/5cm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cm2 RCSB], [https://www.ebi.ac.uk/pdbsum/5cm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cm2 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cm2 OCA], [http://pdbe.org/5cm2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cm2 RCSB], [http://www.ebi.ac.uk/pdbsum/5cm2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cm2 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6C999_YARLI Q6C999_YARLI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Candida lipolytica]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Aleksandrov, A]]
+
[[Category: Yarrowia lipolytica CLIB122]]
-
[[Category: Caroline, V]]
+
[[Category: Aleksandrov A]]
-
[[Category: Graille, M]]
+
[[Category: Caroline V]]
-
[[Category: Lazar, N]]
+
[[Category: Graille M]]
-
[[Category: Letoquart, J]]
+
[[Category: Lazar N]]
-
[[Category: Liger, D]]
+
[[Category: Letoquart J]]
-
[[Category: Tilbeurgh, H Van]]
+
[[Category: Liger D]]
-
[[Category: Tran, N van]]
+
[[Category: Van Tilbeurgh H]]
-
[[Category: Class i methyltransferase]]
+
[[Category: Van Tran N]]
-
[[Category: Methylation]]
+
-
[[Category: Transferase]]
+
-
[[Category: Trna methyltransferase]]
+

Current revision

Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs

PDB ID 5cm2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5cm2"
Personal tools